Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G059870.2 | nucleus, nucleus |
| HORVU6Hr1G039720.2 | nucleus, nucleus |
| HORVU7Hr1G086810.1 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 93.97 | 97.32 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 96.12 | 96.96 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 96.55 | 95.73 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 78.02 | 77.68 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 79.31 | 76.03 |
| KXG33047 | Sorghum | extracellular | 78.45 | 74.59 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 48.28 | 48.28 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 47.84 | 47.64 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 40.09 | 44.08 |
| KRH30068 | Soybean | plastid | 26.29 | 39.1 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.69 | 35.04 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 35.78 | 34.58 |
| KRH28681 | Soybean | nucleus | 36.21 | 34.29 |
| CDY13040 | Canola | cytosol | 29.31 | 34.17 |
| CDY72649 | Canola | nucleus | 29.31 | 34.0 |
| CDY60289 | Canola | nucleus | 29.31 | 33.66 |
| PGSC0003DMT400009031 | Potato | plastid | 35.34 | 33.2 |
| AT4G36620.1 | Thale cress | cytosol | 30.17 | 33.18 |
| KRH08269 | Soybean | nucleus | 35.78 | 33.07 |
| Bra010563.1-P | Field mustard | cytosol | 30.17 | 32.86 |
| HORVU1Hr1G091450.3 | Barley | plastid | 30.6 | 32.72 |
| KRH69915 | Soybean | nucleus | 35.34 | 32.54 |
| CDY24779 | Canola | nucleus | 29.74 | 32.39 |
| CDY53079 | Canola | cytosol | 28.88 | 32.37 |
| CDY51221 | Canola | nucleus | 28.02 | 32.34 |
| CDY69687 | Canola | nucleus | 26.29 | 32.28 |
| Bra017766.1-P | Field mustard | nucleus | 26.29 | 32.28 |
| Solyc02g085190.1.1 | Tomato | plastid | 34.91 | 32.14 |
| CDY70754 | Canola | nucleus | 30.17 | 31.39 |
| Bra011695.1-P | Field mustard | nucleus | 30.17 | 31.39 |
| CDY68627 | Canola | nucleus | 29.74 | 31.08 |
| CDX69237 | Canola | nucleus | 29.31 | 30.49 |
| CDX72587 | Canola | cytosol | 29.74 | 30.4 |
| AT2G18380.1 | Thale cress | cytosol | 27.16 | 30.29 |
| CDX77958 | Canola | nucleus | 33.62 | 29.32 |
| Solyc02g062760.2.1 | Tomato | nucleus | 31.47 | 28.74 |
| PGSC0003DMT400040074 | Potato | nucleus | 30.6 | 28.63 |
| CDY28986 | Canola | cytosol | 32.76 | 27.74 |
| Bra036854.1-P | Field mustard | nucleus | 34.48 | 27.68 |
| CDX73777 | Canola | nucleus | 34.48 | 27.59 |
| AT3G50870.1 | Thale cress | cytosol | 34.05 | 26.78 |
| CDY45238 | Canola | nucleus | 27.16 | 26.69 |
| Bra012080.1-P | Field mustard | nucleus | 27.16 | 26.69 |
| Bra037221.1-P | Field mustard | nucleus | 27.16 | 26.58 |
| CDY30768 | Canola | nucleus | 25.86 | 26.32 |
| CDX90680 | Canola | nucleus | 31.47 | 26.26 |
| Bra012883.1-P | Field mustard | nucleus | 31.47 | 26.26 |
| KRH43324 | Soybean | nucleus | 14.66 | 25.0 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 14.22 | 20.37 |
| HORVU1Hr1G022710.3 | Barley | plastid | 15.09 | 16.2 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 9.05 | 15.67 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 21.55 | 14.53 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 18.1 | 11.67 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G059870 | EnsemblPlants:HORVU3Hr1G059870.2 |
| InterPro:IPR000679 | InterPro:IPR013088 | UniProt:M0WQ58 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000295DE86 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:455449419..455450711
Molecular Weight (calculated)
24251.3 Da
IEP (calculated)
7.496
GRAVY (calculated)
-0.353
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHEAAPCTC GLLYGSCGGG CSMLFAAAPG DHHYYTKQCV DDGSYATYGG SVDCTLSLGT PSTRRAEAGV RAPAAGLPWE AVPSCNGRQD IGPARADQSN
101: AGAASARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAAA APTALASESG IEYAYGYARQ QQQQQQQQWG CYGPAVAKAA SYGMFGDAAA
201: EDGPCLPWGL GVMPSSPAFG SVREMTSLFQ YY
101: AGAASARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAAA APTALASESG IEYAYGYARQ QQQQQQQQWG CYGPAVAKAA SYGMFGDAAA
201: EDGPCLPWGL GVMPSSPAFG SVREMTSLFQ YY
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.