CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88552	nucleus, nucleus
EES19963	nucleus, nucleus
KXG29816	nucleus, nucleus
KXG33047	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	EES19963	AT3G50870.1	23335616
AT3G50870.1	KXG33047	AT3G50870.1	23335616
AT3G50870.1	EES19963	AT3G50870.1	23335616
AT3G50870.1	KXG33047	AT3G50870.1	23335616
AT3G50870.1	EER88552	AT4G26150.1	23335616
AT3G50870.1	KXG29816	AT4G26150.1	23335616
AT3G50870.1	EER88552	AT4G26150.1	23335616
AT3G50870.1	KXG29816	AT4G26150.1	23335616
AT3G50870.1	EES19963	AT4G36620.1	23335616
AT3G50870.1	KXG33047	AT4G36620.1	23335616
AT3G50870.1	EES19963	AT4G36620.1	23335616
AT3G50870.1	KXG33047	AT4G36620.1	23335616
AT3G50870.1	EER88552	AT5G56860.1	23335616
AT3G50870.1	KXG29816	AT5G56860.1	23335616
AT3G50870.1	EER88552	AT5G56860.1	23335616
AT3G50870.1	KXG29816	AT5G56860.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043969_P001	Maize	endoplasmic reticulum	89.75	93.99
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	75.82	80.43
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	73.77	80.36
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	75.82	79.06
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	74.59	78.45
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	75.41	76.03
EES19963	Sorghum	mitochondrion, nucleus, vacuole	51.64	55.02
GSMUA_Achr7P25620_001	Banana	nucleus	45.9	48.07
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	45.08	47.41
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	37.7	43.6
KRH30068	Soybean	plastid	26.23	41.03
KRH28681	Soybean	nucleus	36.07	35.92
PGSC0003DMT400009031	Potato	plastid	36.07	35.63
Solyc02g085190.1.1	Tomato	plastid	36.07	34.92
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	34.02	34.58
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.26	34.31
KRH08269	Soybean	nucleus	34.84	33.86
KRH69915	Soybean	nucleus	34.84	33.73
CDY13040	Canola	cytosol	27.46	33.67
AT4G36620.1	Thale cress	cytosol	29.1	33.65
CDY60289	Canola	nucleus	27.46	33.17
CDY72649	Canola	nucleus	27.05	33.0
CDY24779	Canola	nucleus	28.28	32.39
Bra010563.1-P	Field mustard	cytosol	28.28	32.39
CDY53079	Canola	cytosol	27.46	32.37
CDY69687	Canola	nucleus	25.0	32.28
Bra017766.1-P	Field mustard	nucleus	25.0	32.28
CDX77958	Canola	nucleus	34.84	31.95
CDY51221	Canola	nucleus	26.23	31.84
Bra011695.1-P	Field mustard	nucleus	28.69	31.39
CDY70754	Canola	nucleus	28.69	31.39
CDY68627	Canola	nucleus	28.28	31.08
CDX69237	Canola	nucleus	27.87	30.49
EES20002	Sorghum	plastid	36.89	30.41
CDX72587	Canola	cytosol	28.28	30.4
CDY28986	Canola	cytosol	34.02	30.29
PGSC0003DMT400040074	Potato	nucleus	30.74	30.24
Bra036854.1-P	Field mustard	nucleus	35.66	30.1
CDX73777	Canola	nucleus	35.66	30.0
Solyc02g062760.2.1	Tomato	nucleus	31.15	29.92
AT2G18380.1	Thale cress	cytosol	25.41	29.81
CDX90680	Canola	nucleus	32.79	28.78
Bra012883.1-P	Field mustard	nucleus	32.79	28.78
CDY30768	Canola	nucleus	26.23	28.07
CDY45238	Canola	nucleus	27.05	27.97
Bra012080.1-P	Field mustard	nucleus	27.05	27.97
AT3G50870.1	Thale cress	cytosol	33.61	27.8
Bra037221.1-P	Field mustard	nucleus	25.82	26.58
KRH43324	Soybean	nucleus	14.34	25.74
KXG32453	Sorghum	nucleus	12.7	24.8
KXG21349	Sorghum	cytosol	13.52	21.15
EER93149	Sorghum	nucleus	13.52	21.02
EES04307	Sorghum	nucleus	15.98	17.97
KXG29816	Sorghum	nucleus	20.49	12.92
EER88552	Sorghum	nucleus	20.08	12.69

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A1B6Q548	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	EnsemblPlants:KXG33047	ProteinID:KXG33047	ProteinID:KXG33047.1	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	EnsemblPlantsGene:SORBI_3003G246800	SUPFAM:SSF57716
UniParc:UPI00081ACE74	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:58547816..58549863

Molecular Weight (calculated)

24612.7 Da

IEP (calculated)

7.524

GRAVY (calculated)

-0.163

Length

244 amino acids

Sequence
(BLAST)

001: MLHEAAPCTC GLLYGSCGGG CSLLFAAAAA GDHYYKHCGG GGGGDGEAFS AGGPYGASVD CTLSLGTPST RRAEAGAARA PAAAAAGLHW EAPSAPSCNG
101: RQQQQQETRG AEAGARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRYKKE ERRAAAAAVA PAAAAALAAD GGVDYASYGY ARQPQQWGCY GPAAVAKAAS
201: FGMFGDAAAA EVVDGPCLPW GLGVMPSSPA FGTVREMPSL FQYY

Best Arabidopsis Sequence Match ( AT4G36620.1 )
(BLAST)

001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M

Arabidopsis Description

GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.