CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039113_P001	Maize	cytosol, mitochondrion, nucleus, plastid	68.58	71.48
Zm00001d009668_P001	Maize	mitochondrion, nucleus	59.12	64.81
TraesCS1B01G448200.1	Wheat	plastid	39.86	54.38
TraesCS1A01G418200.1	Wheat	plastid	40.2	54.34
Os05t0578900-01	Rice	nucleus	50.0	53.05
TraesCS1D01G425900.1	Wheat	plastid	38.85	52.51
HORVU1Hr1G091450.3	Barley	plastid	37.84	51.61
EES19963	Sorghum	mitochondrion, nucleus, vacuole	30.07	38.86
KXG33047	Sorghum	extracellular	30.41	36.89
KXG32453	Sorghum	nucleus	9.8	23.2
EER93149	Sorghum	nucleus	10.47	19.75
KXG21349	Sorghum	cytosol	9.46	17.95
EES04307	Sorghum	nucleus	12.84	17.51
EER88552	Sorghum	nucleus	14.53	11.14
KXG29816	Sorghum	nucleus	14.19	10.85

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:8083803	UniProt:C5YWE1	EnsemblPlants:EES20002	ProteinID:EES20002
ProteinID:EES20002.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	GO:GO:0048437	GO:GO:0048510	InterPro:IPR000679	InterPro:IPR013088
PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF292	SMART:SM00401
EnsemblPlantsGene:SORBI_3009G243600	SUPFAM:SSF57716	UniParc:UPI0001A8934F	RefSeq:XP_002441572.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:57980765..57983849

Molecular Weight (calculated)

30317.2 Da

IEP (calculated)

7.700

GRAVY (calculated)

-0.168

Length

296 amino acids

Sequence
(BLAST)

001: MLRHCSSSHH QHRHHQSTAA TASNTMAAAS STTFSLFFPL HTNKAEFAPV AMAADGFDDD SHSSVTTSPS SPSSSSTGSV DCTLSLGTPS SRRAAETTKQ
101: RPACLASCGS VSWDVAATID PSYCCCCCCQ GGSRPAAAAA AAAMNKTAVP CAGHGQDPML VDRRCANCGT SSTPLWRNGP RGPKSLCNAC GIRFKKEERR
201: AAATATAAMD QGGCGYFAQR AQYGAAAAAA AGSAAPVPYG GCEAPAFPCG GGGDVVDAEA VPPQFLAWHL DVVAPAAQAA AFAAVWPERT TRFQYN

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.