CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046354_P001	Maize	nucleus	85.23	88.92
HORVU7Hr1G086810.1	Barley	nucleus	61.92	66.39
TraesCS7D01G359900.1	Wheat	nucleus	61.66	66.3
TraesCS7A01G363100.1	Wheat	nucleus	61.14	66.29
TraesCS7B01G264800.1	Wheat	nucleus	60.88	65.1
Os06t0571800-02	Rice	nucleus	54.92	61.1
GSMUA_Achr7P09030_001	Banana	nucleus	20.21	50.0
KXG29816	Sorghum	nucleus	45.85	45.74
GSMUA_Achr2P16730_001	Banana	nucleus	23.32	43.27
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	28.76	35.92
VIT_04s0008g01290.t01	Wine grape	plastid	27.46	34.64
EER93149	Sorghum	nucleus	13.21	32.48
Bra035633.1-P	Field mustard	nucleus	24.35	31.23
KRH02716	Soybean	nucleus	25.65	30.75
KXG32453	Sorghum	nucleus	9.84	30.4
KRH19153	Soybean	nucleus	24.61	30.25
AT4G26150.1	Thale cress	cytosol	27.46	30.11
Solyc07g038160.2.1	Tomato	nucleus	20.73	30.08
PGSC0003DMT400011449	Potato	nucleus	20.73	27.97
KRH12382	Soybean	nucleus	22.54	27.62
PGSC0003DMT400000761	Potato	nucleus	20.47	27.53
CDX94365	Canola	nucleus	25.65	27.5
CDY20709	Canola	nucleus	27.98	27.41
CDX88593	Canola	nucleus	25.13	27.32
CDY67979	Canola	nucleus	27.72	27.3
Bra026461.1-P	Field mustard	nucleus	25.39	27.22
Bra002788.1-P	Field mustard	nucleus	27.2	27.13
CDY32755	Canola	nucleus	27.2	27.13
KRH61505	Soybean	nucleus	20.47	27.05
CDX89358	Canola	nucleus	25.13	26.94
AT5G56860.1	Thale cress	nucleus	27.72	26.88
CDY32891	Canola	nucleus	26.94	26.8
EES04307	Sorghum	nucleus	15.03	26.73
Solyc12g008830.1.1	Tomato	nucleus	20.21	26.62
CDY42753	Canola	nucleus	25.39	26.49
CDY42752	Canola	nucleus	25.39	26.49
KXG21349	Sorghum	cytosol	10.62	26.28
CDY67546	Canola	nucleus	25.39	26.06
Bra006851.1-P	Field mustard	nucleus, plastid	25.65	25.78
CDY65439	Canola	nucleus	25.65	25.78
Bra019118.1-P	Field mustard	nucleus	25.39	25.26
KRH37384	Soybean	nucleus	21.24	24.33
KRH05458	Soybean	nucleus	19.17	24.18
KRH15535	Soybean	nucleus	19.17	24.18
Bra001644.1-P	Field mustard	nucleus	7.77	20.55
KXG33047	Sorghum	extracellular	12.69	20.08
EES19963	Sorghum	mitochondrion, nucleus, vacuole	10.62	17.9
EES20002	Sorghum	plastid	11.14	14.53

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:8065027	UniProt:C5Z530	EnsemblPlants:EER88552	ProteinID:EER88552
ProteinID:EER88552.1	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088
PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF287	SMART:SM00401
EnsemblPlantsGene:SORBI_3010G173400	SUPFAM:SSF57716	unigene:Sbi.2467	UniParc:UPI0001A892A8	RefSeq:XP_002437185.1	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50865039..50868077

Molecular Weight (calculated)

40719.2 Da

IEP (calculated)

8.292

GRAVY (calculated)

-0.320

Length

386 amino acids

Sequence
(BLAST)

001: MSAIYMSQLS TALPLMEGDH HHHHHHHHQG HFQAFTLPKD PPILFPFVIS NSSASESSLS YGSADHHLLR QHRQTMLEPQ HMIGGSSSAA SSVFATPFPT
101: VESIRDDMIE PASYDPYDMG KLHQVVGGGS SMDACSWTPP AAKMRITRKA TAADPSGAGK KPRRRAHQAA GYDADINMSG QPNLGVIRVC SDCNTTKTPL
201: WRSGPCGPKS LCNACGIRQR KARRAMMAAA STSGPAAVPA TDSDKASPSN AAGAAAAHPK VKKEKRSVDV DRSLPFKKRC KVVQVQQDHA AAVAAPAAAT
301: DRPAVVVQQA ATAAEVGDDD ACPSRDLLVD DIGGLISWSR SPPAAPASAD AASCSFRASP ALPVQQDEIT DAAMLLMTLS CGLVRS

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.