Factsheet for Bra035633.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56860.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20709	Canola	nucleus	100.0	76.4
CDY67979	Canola	nucleus	96.68	74.23
Bra002788.1-P	Field mustard	nucleus	80.4	62.53
AT5G56860.1	Thale cress	nucleus	80.73	61.06
Bra006851.1-P	Field mustard	nucleus, plastid	77.08	60.42
Bra009926.1-P	Field mustard	cytosol	10.96	41.77
Bra019118.1-P	Field mustard	nucleus	51.49	39.95
Bra026461.1-P	Field mustard	nucleus	46.51	38.89
Bra036600.1-P	Field mustard	nucleus	12.96	37.86
Bra037421.1-P	Field mustard	nucleus	15.28	36.22
Bra040288.1-P	Field mustard	nucleus	15.95	34.53
GSMUA_Achr8P24880_001	Banana	nucleus	24.58	33.95
Bra020650.1-P	Field mustard	nucleus	15.61	33.57
KRH19153	Soybean	nucleus	34.22	32.8
KRH02716	Soybean	nucleus	34.88	32.61
KRH12382	Soybean	nucleus	30.9	29.52
Bra022184.1-P	Field mustard	nucleus	15.28	27.71
Bra033533.1-P	Field mustard	nucleus	15.95	26.82
TraesCS7D01G359900.1	Wheat	nucleus	31.89	26.74
TraesCS7A01G363100.1	Wheat	nucleus	31.56	26.69
HORVU7Hr1G086810.1	Barley	nucleus	31.56	26.39
Bra021209.1-P	Field mustard	nucleus	14.95	26.32
KRH37384	Soybean	nucleus	29.24	26.11
TraesCS7B01G264800.1	Wheat	nucleus	31.23	26.04
TraesCS6A01G185900.1	Wheat	cytosol	29.57	26.02
TraesCS6D01G173000.1	Wheat	cytosol	29.24	25.73
TraesCS6B01G214900.1	Wheat	cytosol	28.9	25.44
HORVU6Hr1G039720.2	Barley	cytosol	28.9	25.29
Bra012742.1-P	Field mustard	nucleus	13.95	25.15
Os02t0220400-01	Rice	nucleus	29.24	24.93
Zm00001d016361_P001	Maize	nucleus	30.23	24.59
Zm00001d046354_P001	Maize	nucleus	30.23	24.59
EER88552	Sorghum	nucleus	31.23	24.35
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	10.96	24.09
KXG29816	Sorghum	nucleus	29.57	23.0
Os06t0571800-02	Rice	nucleus	26.25	22.77
Bra017766.1-P	Field mustard	nucleus	13.29	21.16
Bra011695.1-P	Field mustard	nucleus	15.61	21.08
Bra010563.1-P	Field mustard	cytosol	14.29	20.19
Bra001644.1-P	Field mustard	nucleus	9.3	19.18
Bra012080.1-P	Field mustard	nucleus	14.62	18.64
Bra012883.1-P	Field mustard	nucleus	16.28	17.63
Bra036854.1-P	Field mustard	nucleus	16.28	16.95
Bra037221.1-P	Field mustard	nucleus	12.96	16.46

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra035633	EnsemblPlants:Bra035633.1	EnsemblPlants:Bra035633.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4F3I3	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF226	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00025460CB
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT5G56860 (E=7e-104) GNC | GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor

Coordinates

chrA02:+:7115237..7116309

Molecular Weight (calculated)

33657.7 Da

IEP (calculated)

10.088

GRAVY (calculated)

-0.948

Length

301 amino acids

Sequence
(BLAST)

001: MFNGGSSSSY DHTVPKKERR LKLTIRKKDY HDDRTDFPHQ NPTKLNSGSD KWLMSPKMRL IKKTITNNKQ RIDHTNSNDN NHKEDHYPLD HKTTFKEDHD
101: EELKKVSTRT NTAATTEKRC NTINENGYGN NNGVIRVCSD CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAAMAAAVA AGDDQEVVAA RLQQLPVKKK
201: LQNKRKRSNG GDKYNLSSPV VAKTKKCKLK EEEDDAAIVA GDSEISKSTT SSGSSVLPNK FCFDDLTILL SKSSAYQQVF PQDEKEAAIL LMALSYGMVH
301: G

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.