Factsheet for Bra036600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87024	Canola	nucleus	93.2	93.2
Bra009926.1-P	Field mustard	cytosol	62.14	81.01
AT5G26930.1	Thale cress	cytosol	75.73	65.0
Bra037421.1-P	Field mustard	nucleus	44.66	36.22
GSMUA_Achr3P00700_001	Banana	nucleus	40.78	33.87
Bra020650.1-P	Field mustard	nucleus	45.63	33.57
Bra040288.1-P	Field mustard	nucleus	44.66	33.09
Os01t0343300-01	Rice	nucleus	40.78	32.06
KXG32453	Sorghum	nucleus	38.84	32.0
Solyc01g100220.2.1	Tomato	nucleus	45.63	31.54
PGSC0003DMT400063771	Potato	nucleus	45.63	31.13
Zm00001d009193_P001	Maize	plastid	41.75	30.94
Zm00001d037605_P001	Maize	nucleus	42.72	30.77
GSMUA_Achr1P14780_001	Banana	nucleus	36.89	30.16
GSMUA_Achr8P33850_001	Banana	nucleus	42.72	29.53
Bra022184.1-P	Field mustard	nucleus	47.57	29.52
Os01t0976800-01	Rice	nucleus	39.81	28.87
GSMUA_Achr1P26550_001	Banana	nucleus	39.81	28.87
Zm00001d040775_P001	Maize	nucleus	40.78	28.57
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	38.84	28.17
Bra021209.1-P	Field mustard	nucleus	46.6	28.07
KXG21349	Sorghum	cytosol	41.75	27.56
TraesCS1D01G106100.1	Wheat	cytosol	38.84	27.4
TraesCS1B01G126600.1	Wheat	cytosol	38.84	27.4
Bra033533.1-P	Field mustard	nucleus	45.63	26.26
EER93149	Sorghum	nucleus	39.81	26.11
HORVU5Hr1G116310.1	Barley	nucleus	40.78	25.93
Zm00001d034751_P001	Maize	nucleus	40.78	25.77
Bra012742.1-P	Field mustard	nucleus	41.75	25.75
TraesCS1A01G097300.1	Wheat	cytosol	38.84	25.16
TraesCS5D01G508800.1	Wheat	nucleus	38.84	24.69
TraesCS3A01G538400.1	Wheat	nucleus	39.81	24.4
TraesCS5B01G508800.1	Wheat	nucleus	38.84	23.95
TraesCS3D01G544000.1	Wheat	nucleus	39.81	22.91
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	42.72	22.8
TraesCS3B01G603900.1	Wheat	nucleus	39.81	22.78
TraesCS4A01G364700.1	Wheat	nucleus	37.86	21.55
HORVU6Hr1G093630.3	Barley	mitochondrion	27.18	20.9
Bra001644.1-P	Field mustard	nucleus	29.13	20.55
Zm00001d011771_P001	Maize	nucleus	37.86	20.0
EES04307	Sorghum	nucleus	40.78	19.35
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	25.24	18.98
HORVU1Hr1G022710.3	Barley	plastid	38.84	18.52
Bra017766.1-P	Field mustard	nucleus	25.24	13.76
Bra012080.1-P	Field mustard	nucleus	31.07	13.56
Bra010563.1-P	Field mustard	cytosol	27.18	13.15
Bra035633.1-P	Field mustard	nucleus	37.86	12.96
Bra011695.1-P	Field mustard	nucleus	27.18	12.56
Bra037221.1-P	Field mustard	nucleus	28.16	12.24
Bra026461.1-P	Field mustard	nucleus	38.84	11.11
Bra012883.1-P	Field mustard	nucleus	29.13	10.79
Bra036854.1-P	Field mustard	nucleus	29.13	10.38
Bra002788.1-P	Field mustard	nucleus	38.84	10.34
Bra019118.1-P	Field mustard	nucleus	38.84	10.31
Bra006851.1-P	Field mustard	nucleus, plastid	37.86	10.16

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra036600	EnsemblPlants:Bra036600.1	EnsemblPlants:Bra036600.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4F691	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF306	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002541D69
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT5G26930 (E=6e-032) | zinc finger (GATA type) family protein

Coordinates

chrA09:+:1941128..1941548

Molecular Weight (calculated)

11494.2 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.397

Length

103 amino acids

Sequence
(BLAST)

001: MEGEKETVRC CSDCKTTKTP MWRGGPSGPK SLCNACGIRF MRQRRTELLG IRIIHTHKAY KKINPSLLSS HGSAGLKKQR RSLKEEEQAA LCLLLLSCSS
101: VFV

Best Arabidopsis Sequence Match ( AT5G26930.1 )
(BLAST)

001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA

Arabidopsis Description

GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.