Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036600.1-P | Field mustard | nucleus | 93.2 | 93.2 |
| CDY25008 | Canola | nucleus | 81.55 | 84.0 |
| AT5G26930.1 | Thale cress | cytosol | 76.7 | 65.83 |
| CDY68751 | Canola | cytosol, mitochondrion | 62.14 | 63.37 |
| CDX80603 | Canola | nucleus | 79.61 | 55.78 |
| CDX85400 | Canola | nucleus | 45.63 | 37.01 |
| CDX86241 | Canola | nucleus | 44.66 | 36.22 |
| CDY05639 | Canola | nucleus | 45.63 | 35.88 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 41.75 | 34.68 |
| CDY33918 | Canola | nucleus | 46.6 | 34.04 |
| CDY34933 | Canola | nucleus | 45.63 | 33.57 |
| KXG32453 | Sorghum | nucleus | 38.84 | 32.0 |
| Solyc01g100220.2.1 | Tomato | nucleus | 45.63 | 31.54 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 45.63 | 31.54 |
| Os01t0343300-01 | Rice | nucleus | 39.81 | 31.3 |
| PGSC0003DMT400063771 | Potato | nucleus | 45.63 | 31.13 |
| Os01t0976800-01 | Rice | nucleus | 42.72 | 30.99 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 42.72 | 30.99 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 37.86 | 30.95 |
| Zm00001d037605_P001 | Maize | nucleus | 42.72 | 30.77 |
| Zm00001d009193_P001 | Maize | plastid | 40.78 | 30.22 |
| CDX92103 | Canola | nucleus | 48.54 | 30.12 |
| CDY34429 | Canola | cytosol | 44.66 | 30.07 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 40.78 | 29.58 |
| CDX95897 | Canola | nucleus | 46.6 | 29.27 |
| CDY34981 | Canola | nucleus | 47.57 | 28.66 |
| CDX90545 | Canola | nucleus | 40.78 | 28.57 |
| CDX82388 | Canola | nucleus | 47.57 | 28.16 |
| EER93149 | Sorghum | nucleus | 42.72 | 28.03 |
| Zm00001d040775_P001 | Maize | nucleus | 39.81 | 27.89 |
| Zm00001d034751_P001 | Maize | nucleus | 43.69 | 27.61 |
| KXG21349 | Sorghum | cytosol | 41.75 | 27.56 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 38.84 | 27.4 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 38.84 | 27.4 |
| CDY52723 | Canola | nucleus | 47.57 | 27.22 |
| CDX75893 | Canola | nucleus | 47.57 | 26.78 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 41.75 | 26.54 |
| CDY32214 | Canola | nucleus | 45.63 | 26.26 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 41.75 | 25.6 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 39.81 | 25.31 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 38.84 | 25.16 |
| CDY09717 | Canola | nucleus | 42.72 | 24.86 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 39.81 | 24.55 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 41.75 | 24.02 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 41.75 | 23.89 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 42.72 | 22.8 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 38.84 | 22.1 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 28.16 | 21.64 |
| Zm00001d011771_P001 | Maize | nucleus | 39.81 | 21.03 |
| EES04307 | Sorghum | nucleus | 43.69 | 20.74 |
| HORVU1Hr1G022710.3 | Barley | plastid | 38.84 | 18.52 |
| CDY53079 | Canola | cytosol | 29.13 | 14.49 |
| CDY60289 | Canola | nucleus | 27.18 | 13.86 |
| CDY69687 | Canola | nucleus | 25.24 | 13.76 |
| CDY30768 | Canola | nucleus | 30.1 | 13.6 |
| CDY13040 | Canola | cytosol | 26.21 | 13.57 |
| CDY45238 | Canola | nucleus | 31.07 | 13.56 |
| CDY72649 | Canola | nucleus | 26.21 | 13.5 |
| CDY24779 | Canola | nucleus | 27.18 | 13.15 |
| CDX69237 | Canola | nucleus | 28.16 | 13.0 |
| CDY51221 | Canola | nucleus | 25.24 | 12.94 |
| CDX72587 | Canola | cytosol | 28.16 | 12.78 |
| CDY68627 | Canola | nucleus | 27.18 | 12.61 |
| CDY70754 | Canola | nucleus | 27.18 | 12.56 |
| CDX77958 | Canola | nucleus | 29.13 | 11.28 |
| CDX94365 | Canola | nucleus | 38.84 | 11.11 |
| CDX89358 | Canola | nucleus | 38.84 | 11.11 |
| CDX88593 | Canola | nucleus | 37.86 | 10.99 |
| CDY28986 | Canola | cytosol | 29.13 | 10.95 |
| CDY42753 | Canola | nucleus | 38.84 | 10.81 |
| CDY42752 | Canola | nucleus | 38.84 | 10.81 |
| CDX90680 | Canola | nucleus | 29.13 | 10.79 |
| CDX73777 | Canola | nucleus | 30.1 | 10.69 |
| CDY67546 | Canola | nucleus | 37.86 | 10.37 |
| CDY32755 | Canola | nucleus | 38.84 | 10.34 |
| CDY32891 | Canola | nucleus | 38.84 | 10.31 |
| CDY67979 | Canola | nucleus | 38.84 | 10.2 |
| CDY20709 | Canola | nucleus | 37.86 | 9.9 |
| CDY65439 | Canola | nucleus | 36.89 | 9.9 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078DF98 | EnsemblPlants:CDX87024 | ProteinID:CDX87024 | ProteinID:CDX87024.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00145899001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EF05C0 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC09g03390D
Coordinates
chrLK031849:-:39428..40119
Molecular Weight (calculated)
11544.3 Da
IEP (calculated)
10.488
GRAVY (calculated)
-0.398
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEKETVRC CSDCKTTKTP MWRGGPSGPK SLCNACGIRF MRQRRTELLG IRVIHTHKAY KKINTSLLSS HGSVALKKRR RSLKEEEQAA MCLLLLSCSS
101: VFA
101: VFA
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.