Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002788.1-P | Field mustard | nucleus | 94.33 | 94.57 |
| CDY32755 | Canola | nucleus | 94.33 | 94.57 |
| CDY65439 | Canola | nucleus | 80.67 | 81.51 |
| CDY67979 | Canola | nucleus | 82.22 | 81.38 |
| CDY20709 | Canola | nucleus | 82.47 | 81.22 |
| CDX88593 | Canola | nucleus | 72.68 | 79.44 |
| AT5G56860.1 | Thale cress | nucleus | 81.19 | 79.15 |
| CDY42752 | Canola | nucleus | 49.48 | 51.89 |
| CDY42753 | Canola | nucleus | 49.23 | 51.62 |
| CDX94365 | Canola | nucleus | 47.42 | 51.11 |
| CDY67546 | Canola | nucleus | 49.48 | 51.06 |
| CDX89358 | Canola | nucleus | 46.39 | 50.0 |
| CDY25008 | Canola | nucleus | 10.57 | 41.0 |
| CDX87024 | Canola | nucleus | 10.31 | 38.84 |
| KRH19153 | Soybean | nucleus | 30.67 | 37.9 |
| KRH02716 | Soybean | nucleus | 30.67 | 36.96 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 20.62 | 36.7 |
| CDY05639 | Canola | nucleus | 12.11 | 35.88 |
| CDX85400 | Canola | nucleus | 11.6 | 35.43 |
| CDX86241 | Canola | nucleus | 11.6 | 35.43 |
| CDY68751 | Canola | cytosol, mitochondrion | 8.76 | 33.66 |
| KRH12382 | Soybean | nucleus | 27.32 | 33.65 |
| CDY34933 | Canola | nucleus | 11.86 | 32.86 |
| CDY33918 | Canola | nucleus | 11.86 | 32.62 |
| KRH37384 | Soybean | nucleus | 26.55 | 30.56 |
| CDY34429 | Canola | cytosol | 11.6 | 29.41 |
| CDX90545 | Canola | nucleus | 11.08 | 29.25 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 26.8 | 29.21 |
| CDX92103 | Canola | nucleus | 12.37 | 28.92 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 26.29 | 28.41 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 26.29 | 28.33 |
| CDY34981 | Canola | nucleus | 12.37 | 28.07 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.03 | 27.98 |
| Zm00001d046354_P001 | Maize | nucleus | 26.29 | 27.57 |
| CDY52723 | Canola | nucleus | 12.63 | 27.22 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 23.97 | 27.19 |
| EER88552 | Sorghum | nucleus | 26.8 | 26.94 |
| Os02t0220400-01 | Rice | nucleus | 24.48 | 26.91 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 23.71 | 26.9 |
| CDX95897 | Canola | nucleus | 11.34 | 26.83 |
| CDY32214 | Canola | nucleus | 12.37 | 26.82 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 23.71 | 26.74 |
| CDX80603 | Canola | nucleus | 10.05 | 26.53 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 23.2 | 26.32 |
| Zm00001d016361_P001 | Maize | nucleus | 25.0 | 26.22 |
| CDX82388 | Canola | nucleus | 11.6 | 25.86 |
| Os06t0571800-02 | Rice | nucleus | 22.94 | 25.65 |
| CDY09717 | Canola | nucleus | 11.6 | 25.42 |
| CDX75893 | Canola | nucleus | 11.86 | 25.14 |
| KXG29816 | Sorghum | nucleus | 24.48 | 24.55 |
| CDY60289 | Canola | nucleus | 11.34 | 21.78 |
| CDY51221 | Canola | nucleus | 11.08 | 21.39 |
| CDY13040 | Canola | cytosol | 10.82 | 21.11 |
| CDY72649 | Canola | nucleus | 10.57 | 20.5 |
| CDY53079 | Canola | cytosol | 10.82 | 20.29 |
| CDY69687 | Canola | nucleus | 9.79 | 20.11 |
| CDY68627 | Canola | nucleus | 11.34 | 19.82 |
| CDX69237 | Canola | nucleus | 11.34 | 19.73 |
| CDY70754 | Canola | nucleus | 11.08 | 19.28 |
| CDY24779 | Canola | nucleus | 10.57 | 19.25 |
| CDY28986 | Canola | cytosol | 13.4 | 18.98 |
| CDX72587 | Canola | cytosol | 11.08 | 18.94 |
| CDX90680 | Canola | nucleus | 13.4 | 18.7 |
| CDX77958 | Canola | nucleus | 12.63 | 18.42 |
| CDY45238 | Canola | nucleus | 10.57 | 17.37 |
| CDX73777 | Canola | nucleus | 12.89 | 17.24 |
| CDY30768 | Canola | nucleus | 9.79 | 16.67 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078H4U1 | UniProt:A0A078H4U1 | EnsemblPlants:CDY32891 | ProteinID:CDY32891 |
| ProteinID:CDY32891.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00053040001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF191 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EB67AD | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC09g33380DBnaC09g33380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4U1]
Coordinates
chrLK032301:-:344998..347157
Molecular Weight (calculated)
43516.9 Da
IEP (calculated)
9.533
GRAVY (calculated)
-0.913
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNFHYSID LNEDQSHHEE PFFYPLGSSS SLLHNYQVPS NSSSSISSLS SYLPFLINSQ EDQHVAYNNT YQYEHLNFSQ PLKANMFNGG SSSSSYDHMV
101: PKKEKRLKLT IRKKDHHDDQ TDFLHQNPTK PNSESDKWMM SPKMRLIKKT ITNNKQPTDQ ANNNNNRNHK EDHYPLNQKT SFEKDHDEDL KKVTTKTTTA
201: VTTENRYNTI KVNGYGNNNG VIRVCSDCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARKA AMAAAVAAGD QEVVAAQLQQ ILAKKKLQSK KKRSNGGDKF
301: NLSPPIMAKT KKCKIKEQEQ EDTTTVAGDS EISKSTTSSD SSISSNKLCF DDLAIMLSKS SAYQQVFPQD EKEAAILLMA LSHGMVHG
101: PKKEKRLKLT IRKKDHHDDQ TDFLHQNPTK PNSESDKWMM SPKMRLIKKT ITNNKQPTDQ ANNNNNRNHK EDHYPLNQKT SFEKDHDEDL KKVTTKTTTA
201: VTTENRYNTI KVNGYGNNNG VIRVCSDCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARKA AMAAAVAAGD QEVVAAQLQQ ILAKKKLQSK KKRSNGGDKF
301: NLSPPIMAKT KKCKIKEQEQ EDTTTVAGDS EISKSTTSSD SSISSNKLCF DDLAIMLSKS SAYQQVFPQD EKEAAILLMA LSHGMVHG
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Arabidopsis Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.