Factsheet for Os02t0220400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G185900.1	Wheat	cytosol	65.16	67.25
TraesCS6D01G173000.1	Wheat	cytosol	65.16	67.25
TraesCS6B01G214900.1	Wheat	cytosol	61.76	63.74
HORVU6Hr1G039720.2	Barley	cytosol	62.04	63.66
Zm00001d016361_P001	Maize	nucleus	59.77	57.03
KXG29816	Sorghum	nucleus	60.06	54.78
GSMUA_Achr7P09030_001	Banana	nucleus	22.95	51.92
Os06t0571800-02	Rice	nucleus	44.19	44.96
GSMUA_Achr2P16730_001	Banana	nucleus	24.65	41.83
Os01t0976800-01	Rice	nucleus	15.01	37.32
VIT_04s0008g01290.t01	Wine grape	plastid	30.03	34.64
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	30.03	34.3
Solyc07g038160.2.1	Tomato	nucleus	23.8	31.58
KRH02716	Soybean	nucleus	28.05	30.75
Os01t0343300-01	Rice	nucleus	11.33	30.53
PGSC0003DMT400011449	Potato	nucleus	24.36	30.07
KRH19153	Soybean	nucleus	26.35	29.62
Bra035633.1-P	Field mustard	nucleus	24.93	29.24
PGSC0003DMT400000761	Potato	nucleus	22.66	27.87
KRH12382	Soybean	nucleus	24.65	27.62
KRH61505	Soybean	nucleus	22.66	27.4
Solyc12g008830.1.1	Tomato	nucleus	22.38	26.96
AT4G26150.1	Thale cress	cytosol	25.21	25.28
KRH37384	Soybean	nucleus	23.8	24.93
CDY20709	Canola	nucleus	27.76	24.87
CDY42753	Canola	nucleus	26.06	24.86
CDY42752	Canola	nucleus	26.06	24.86
CDY32755	Canola	nucleus	27.2	24.81
Bra002788.1-P	Field mustard	nucleus	27.2	24.81
KRH05458	Soybean	nucleus	21.25	24.51
KRH15535	Soybean	nucleus	21.25	24.51
CDY32891	Canola	nucleus	26.91	24.48
CDY67979	Canola	nucleus	26.91	24.23
CDY67546	Canola	nucleus	25.78	24.2
Bra026461.1-P	Field mustard	nucleus	24.65	24.17
CDX88593	Canola	nucleus	24.08	23.94
CDX89358	Canola	nucleus	24.36	23.89
CDX94365	Canola	nucleus	24.36	23.89
Bra019118.1-P	Field mustard	nucleus	26.06	23.71
AT5G56860.1	Thale cress	nucleus	26.63	23.62
CDY65439	Canola	nucleus	24.93	22.92
Bra006851.1-P	Field mustard	nucleus, plastid	24.93	22.92
Bra001644.1-P	Field mustard	nucleus	8.5	20.55
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	13.88	20.25
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	10.76	19.69
Os05t0578900-01	Rice	nucleus	15.3	19.35
Os05t0567900-00	Rice	cytosol, extracellular, plastid	12.75	18.0

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:4328751	EMBL:AK099607	ProteinID:BAD17612.1	ProteinID:BAF08230.1
ProteinID:BAS77697.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009646	GO:GO:0009658	GO:GO:0009719
GO:GO:0009735	GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	GO:GO:0099402
GO:GO:1901698	InterPro:IPR000679	InterPro:IPR013088	EnsemblPlantsGene:Os02g0220400	EnsemblPlants:Os02t0220400-01	PFAM:PF00320
ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF287	UniProt:Q6YW48	SMART:SM00401
SUPFAM:SSF57716	UniParc:UPI000035AF5C	RefSeq:XP_015625859.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

CYTOKININ GATA TRANSCRIPTION FACTOR 1GATA transcription factor, Chloroplast development, Plant architecture (Os02t0220400-01)

Coordinates

chr2:-:6705753..6707433

Molecular Weight (calculated)

37640.1 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.378

Length

353 amino acids

Sequence
(BLAST)

001: MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QIYGDQGLRR QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM
101: IQRSSYDPYD IESNNKQHAN GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD CNTTKTPLWR SGPCGPKSLC
201: NACGIRQRKA RRAMAAAANG GAAVAPAKSV AAAPVNNKPA AKKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAAGE VVAAAPKDQD HVIVVGGENA
301: AATSMPAQNP ISKAAATAAA AAASPAFFHG LPRDEITDAA MLLMTLSCGL VHS

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.