Factsheet for PGSC0003DMT400011449

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g038160.2.1	Tomato	nucleus	83.57	89.85
PGSC0003DMT400000761	Potato	nucleus	54.55	54.36
GSMUA_Achr2P15750_001	Banana	plastid	19.58	42.11
PGSC0003DMT400081417	Potato	nucleus	14.69	39.62
GSMUA_Achr10P...	Banana	mitochondrion	27.27	39.0
VIT_04s0008g01290.t01	Wine grape	plastid	35.31	33.01
PGSC0003DMT400063771	Potato	nucleus	16.78	31.79
KRH61505	Soybean	nucleus	31.47	30.82
PGSC0003DMT400006011	Potato	nucleus	17.83	30.54
GSMUA_Achr4P30820_001	Banana	nucleus	28.67	30.26
PGSC0003DMT400011779	Potato	nucleus	16.78	28.57
KRH15535	Soybean	nucleus	29.02	27.12
KRH05458	Soybean	nucleus	28.32	26.47
PGSC0003DMT400060241	Potato	nucleus	16.78	24.37
Os02t0220400-01	Rice	nucleus	30.07	24.36
TraesCS6A01G185900.1	Wheat	cytosol	28.32	23.68
TraesCS6D01G173000.1	Wheat	cytosol	27.97	23.39
TraesCS7D01G359900.1	Wheat	nucleus	29.02	23.12
HORVU7Hr1G086810.1	Barley	nucleus	29.02	23.06
TraesCS7A01G363100.1	Wheat	nucleus	28.67	23.03
HORVU6Hr1G039720.2	Barley	cytosol	27.62	22.97
TraesCS6B01G214900.1	Wheat	cytosol	27.27	22.81
TraesCS7B01G264800.1	Wheat	nucleus	28.67	22.71
Zm00001d046354_P001	Maize	nucleus	28.32	21.89
Zm00001d016361_P001	Maize	nucleus	27.97	21.62
Os06t0571800-02	Rice	nucleus	25.52	21.04
EER88552	Sorghum	nucleus	27.97	20.73
KXG29816	Sorghum	nucleus	27.27	20.16
Bra001644.1-P	Field mustard	nucleus	9.79	19.18
PGSC0003DMT400009031	Potato	plastid	16.43	19.03
PGSC0003DMT400040074	Potato	nucleus	15.73	18.15

Protein Annotations

EntrezGene:102595859	MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:M0ZZK5	PFAM:PF00320	EnsemblPlantsGene:PGSC0003DMG400004493	PGSC:PGSC0003DMG400004493	EnsemblPlants:PGSC0003DMT400011449
ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF226	SMART:SM00401	SUPFAM:SSF57716
UniParc:UPI000295A4F1	RefSeq:XP_006346565.2	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

GATA domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004493]

Coordinates

chr7:-:34660738..34662268

Molecular Weight (calculated)

31994.7 Da

IEP (calculated)

10.072

GRAVY (calculated)

-0.871

Length

286 amino acids

Sequence
(BLAST)

001: MTPPDHITPN FPFGLNNNNN NDLNNSLVTP NYQASSSHSS YNHFFFNSTT NQTASFHHQH TQYYMQNEHQ LEVDNDGGSS YDLGKKNKGG SGLKLSLWKR
101: EDKLVMSSEI KDLDQERKKN ITNNDCIKLK LGDQKQQPIQ TDYSSNNIPI RVCTDCNTTK TPLWRSGPKG PKSLCNACGI RQRKARRAMA AAANGKTDHQ
201: TAMKIKVQQH KPNITKVRTN NHVTPFKKRC KLGPSSSGTN NAPKKLGFED LLINLSNQLA FQQIFPQDEK EAAILLMALS SGLVHG

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.