Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g100220.2.1 | Tomato | nucleus | 95.36 | 96.64 |
| PGSC0003DMT400081417 | Potato | nucleus | 37.75 | 53.77 |
| Bra036600.1-P | Field mustard | nucleus | 31.13 | 45.63 |
| CDX87024 | Canola | nucleus | 31.13 | 45.63 |
| CDY25008 | Canola | nucleus | 28.48 | 43.0 |
| Bra009926.1-P | Field mustard | cytosol | 21.85 | 41.77 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 33.77 | 41.13 |
| PGSC0003DMT400011779 | Potato | nucleus | 44.37 | 39.88 |
| Os01t0976800-01 | Rice | nucleus | 37.09 | 39.44 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 40.4 | 37.65 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 40.4 | 37.65 |
| EER93149 | Sorghum | nucleus | 39.07 | 37.58 |
| PGSC0003DMT400060241 | Potato | nucleus | 48.34 | 37.06 |
| AT5G26930.1 | Thale cress | cytosol | 29.14 | 36.67 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 40.4 | 36.53 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 30.46 | 36.51 |
| Zm00001d034751_P001 | Maize | nucleus | 39.07 | 36.2 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 33.11 | 35.21 |
| Os01t0343300-01 | Rice | nucleus | 30.46 | 35.11 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 34.44 | 34.9 |
| KXG32453 | Sorghum | nucleus | 28.48 | 34.4 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 30.46 | 34.33 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 37.09 | 33.33 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 31.13 | 33.1 |
| CDY68751 | Canola | cytosol, mitochondrion | 21.85 | 32.67 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 38.41 | 32.04 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 37.75 | 31.84 |
| Zm00001d009193_P001 | Maize | plastid | 29.14 | 31.65 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 36.42 | 30.56 |
| Zm00001d037605_P001 | Maize | nucleus | 28.48 | 30.07 |
| PGSC0003DMT400006011 | Potato | nucleus | 33.11 | 29.94 |
| Zm00001d011771_P001 | Maize | nucleus | 38.41 | 29.74 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 28.48 | 29.45 |
| CDX80603 | Canola | nucleus | 28.48 | 29.25 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 27.81 | 28.77 |
| Zm00001d040775_P001 | Maize | nucleus | 27.81 | 28.57 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 28.48 | 27.04 |
| EES04307 | Sorghum | nucleus | 38.41 | 26.73 |
| KXG21349 | Sorghum | cytosol | 27.15 | 26.28 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 29.8 | 23.32 |
| HORVU1Hr1G022710.3 | Barley | plastid | 28.48 | 19.91 |
| PGSC0003DMT400000761 | Potato | nucleus | 33.77 | 17.77 |
| PGSC0003DMT400011449 | Potato | nucleus | 31.79 | 16.78 |
| PGSC0003DMT400009031 | Potato | plastid | 20.53 | 12.55 |
| PGSC0003DMT400040074 | Potato | nucleus | 17.88 | 10.89 |
Protein Annotations
| EntrezGene:102596082 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | UniProt:M1CB78 | PFAM:PF00320 | EnsemblPlantsGene:PGSC0003DMG400024783 | PGSC:PGSC0003DMG400024783 | EnsemblPlants:PGSC0003DMT400063771 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 |
| UniParc:UPI000296EE6B | RefSeq:XP_006344726.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024783]
Coordinates
chr1:-:77914826..77916064
Molecular Weight (calculated)
16383.1 Da
IEP (calculated)
10.651
GRAVY (calculated)
-0.718
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTQKEESS GSEATGISKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKSSPIGL TKGATKKKEK PLSNSGSTEE VEYCKKGKIG NGKDGKLSKV
101: LRVKLMMLGK EVVILQRQRS SMKKPRNQRK LDEVERAAVL LMALSCGSVF G
101: LRVKLMMLGK EVVILQRQRS SMKKPRNQRK LDEVERAAVL LMALSCGSVF G
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.