Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G544000.1 | Wheat | nucleus | 86.9 | 81.56 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 85.12 | 79.44 |
| KRH68462 | Soybean | cytosol | 29.76 | 62.5 |
| EER93149 | Sorghum | nucleus | 51.79 | 55.41 |
| Zm00001d034751_P001 | Maize | nucleus | 52.98 | 54.6 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 26.19 | 53.01 |
| Solyc09g075610.2.1 | Tomato | plastid | 26.79 | 50.56 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 37.5 | 47.01 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 34.52 | 46.77 |
| PGSC0003DMT400081417 | Potato | nucleus | 29.17 | 46.23 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 49.4 | 45.86 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 32.74 | 44.35 |
| CDX85400 | Canola | nucleus | 32.74 | 43.31 |
| CDY25008 | Canola | nucleus | 25.6 | 43.0 |
| CDX87024 | Canola | nucleus | 25.6 | 41.75 |
| Bra037421.1-P | Field mustard | nucleus | 31.55 | 41.73 |
| CDX86241 | Canola | nucleus | 31.55 | 41.73 |
| Bra009926.1-P | Field mustard | cytosol | 19.05 | 40.51 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 35.71 | 40.27 |
| Bra036600.1-P | Field mustard | nucleus | 24.4 | 39.81 |
| KRH02314 | Soybean | nucleus | 32.74 | 39.29 |
| Bra020650.1-P | Field mustard | nucleus | 32.74 | 39.29 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 35.71 | 39.22 |
| CDY33918 | Canola | nucleus | 32.74 | 39.01 |
| CDY05639 | Canola | nucleus | 29.76 | 38.17 |
| AT5G49300.1 | Thale cress | cytosol | 31.55 | 38.13 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 32.14 | 38.03 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.55 | 37.32 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 27.98 | 37.3 |
| PGSC0003DMT400063771 | Potato | nucleus | 33.33 | 37.09 |
| Solyc01g100220.2.1 | Tomato | nucleus | 32.74 | 36.91 |
| AT5G26930.1 | Thale cress | cytosol | 26.19 | 36.67 |
| Solyc12g099370.1.1 | Tomato | nucleus | 36.31 | 36.31 |
| PGSC0003DMT400011779 | Potato | nucleus | 36.31 | 36.31 |
| AT3G06740.1 | Thale cress | nucleus | 32.14 | 36.24 |
| Bra040288.1-P | Field mustard | nucleus | 29.76 | 35.97 |
| CDY34933 | Canola | nucleus | 29.76 | 35.71 |
| KRH50773 | Soybean | nucleus | 33.33 | 35.44 |
| CDX90545 | Canola | nucleus | 30.36 | 34.69 |
| CDY34429 | Canola | cytosol | 31.55 | 34.64 |
| CDY34981 | Canola | nucleus | 33.33 | 32.75 |
| Bra021209.1-P | Field mustard | nucleus | 33.33 | 32.75 |
| CDX92103 | Canola | nucleus | 32.14 | 32.53 |
| CDX95897 | Canola | nucleus | 31.55 | 32.32 |
| Bra022184.1-P | Field mustard | nucleus | 31.55 | 31.93 |
| CDY68751 | Canola | cytosol, mitochondrion | 19.05 | 31.68 |
| Bra012742.1-P | Field mustard | nucleus | 30.95 | 31.14 |
| CDY52723 | Canola | nucleus | 33.33 | 31.11 |
| CDX82388 | Canola | nucleus | 32.14 | 31.03 |
| CDY32214 | Canola | nucleus | 32.74 | 30.73 |
| Bra033533.1-P | Field mustard | nucleus | 32.74 | 30.73 |
| CDX75893 | Canola | nucleus | 32.74 | 30.05 |
| CDY09717 | Canola | nucleus | 31.55 | 29.94 |
| AT3G16870.1 | Thale cress | nucleus | 33.33 | 29.47 |
| PGSC0003DMT400060241 | Potato | nucleus | 34.52 | 29.44 |
| Solyc05g054400.2.1 | Tomato | nucleus | 34.52 | 29.44 |
| CDX80603 | Canola | nucleus | 25.0 | 28.57 |
| AT4G16141.1 | Thale cress | cytosol | 32.14 | 27.41 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 25.0 | 26.42 |
| TraesCS1A01G418200.1 | Wheat | plastid | 19.64 | 15.07 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 20.24 | 14.53 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 29.17 | 14.33 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 25.6 | 12.08 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF279 | SMART:SM00401 | SUPFAM:SSF57716 | EnsemblPlantsGene:TraesCS3A01G538400 |
| EnsemblPlants:TraesCS3A01G538400.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:749415111..749415738
Molecular Weight (calculated)
18763.5 Da
IEP (calculated)
9.588
GRAVY (calculated)
-0.916
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPAEMESHK MVEVEAAADP EERTASGDPK ACDDCNTTKT PLWRGGPNGP KSLCNACGIR YRKRRRVAMG LDPEAKRKPK RDDAILSKAE ASSTKEEEEE
101: EDNKASTNKI KTKTTTHTVE LHMVGFAKDA VLKQRRRMRM RRRKPSCLGE EERAAILLMS LSSGVIYA
101: EDNKASTNKI KTKTTTHTVE LHMVGFAKDA VLKQRRRMRM RRRKPSCLGE EERAAILLMS LSSGVIYA
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.