Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34429 | Canola | cytosol | 64.47 | 83.01 |
| CDY32214 | Canola | nucleus | 71.57 | 78.77 |
| Bra033533.1-P | Field mustard | nucleus | 71.07 | 78.21 |
| AT3G16870.1 | Thale cress | nucleus | 61.93 | 64.21 |
| AT5G49300.1 | Thale cress | cytosol | 34.01 | 48.2 |
| AT3G06740.1 | Thale cress | nucleus | 31.98 | 42.28 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 26.4 | 41.94 |
| AT5G26930.1 | Thale cress | cytosol | 24.87 | 40.83 |
| Solyc12g099370.1.1 | Tomato | nucleus | 34.01 | 39.88 |
| PGSC0003DMT400011779 | Potato | nucleus | 34.01 | 39.88 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 29.95 | 39.6 |
| EER93149 | Sorghum | nucleus | 29.44 | 36.94 |
| Os01t0976800-01 | Rice | nucleus | 25.89 | 35.92 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 29.44 | 35.8 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 25.38 | 35.21 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 28.93 | 35.19 |
| Zm00001d034751_P001 | Maize | nucleus | 28.93 | 34.97 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 24.87 | 34.51 |
| KXG32453 | Sorghum | nucleus | 21.83 | 34.4 |
| Os01t0343300-01 | Rice | nucleus | 22.34 | 33.59 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 28.43 | 33.53 |
| PGSC0003DMT400060241 | Potato | nucleus | 33.5 | 33.5 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 21.32 | 33.33 |
| Solyc05g054400.2.1 | Tomato | nucleus | 32.99 | 32.99 |
| Zm00001d037605_P001 | Maize | nucleus | 23.86 | 32.87 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 27.41 | 32.14 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 21.83 | 32.09 |
| Zm00001d009193_P001 | Maize | plastid | 22.34 | 31.65 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 27.92 | 30.73 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 22.34 | 30.14 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 27.41 | 30.0 |
| EES04307 | Sorghum | nucleus | 32.49 | 29.49 |
| KXG21349 | Sorghum | cytosol | 23.35 | 29.49 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 21.83 | 29.45 |
| Zm00001d040775_P001 | Maize | nucleus | 21.83 | 29.25 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 26.4 | 28.73 |
| Zm00001d011771_P001 | Maize | nucleus | 28.43 | 28.72 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 22.84 | 28.3 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 24.37 | 24.87 |
| HORVU1Hr1G022710.3 | Barley | plastid | 22.34 | 20.37 |
| AT4G36620.1 | Thale cress | cytosol | 15.23 | 14.22 |
| AT2G18380.1 | Thale cress | cytosol | 14.72 | 13.94 |
| AT4G26150.1 | Thale cress | cytosol | 20.81 | 11.65 |
| AT5G56860.1 | Thale cress | nucleus | 22.84 | 11.31 |
| AT3G50870.1 | Thale cress | cytosol | 16.75 | 11.19 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:827301 | ProteinID:AEE83698.1 | EMBL:AK119021 | ArrayExpress:AT4G16141 |
| EnsemblPlantsGene:AT4G16141 | RefSeq:AT4G16141 | TAIR:AT4G16141 | RefSeq:AT4G16141-TAIR-G | EnsemblPlants:AT4G16141.1 | TAIR:AT4G16141.1 |
| GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | RefSeq:NP_680707.4 |
| PFAM:PF00320 | PO:PO:0000293 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 |
| UniProt:Q8GW81 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI00000ADFF9 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| SEG:seg | : | : | : | : | : |
Description
GATA type zinc finger transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q8GW81]
Coordinates
chr4:-:9131532..9133161
Molecular Weight (calculated)
21184.5 Da
IEP (calculated)
10.667
GRAVY (calculated)
-0.807
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMTEETKTT KLESAGDSSD VDNGNCSSSG SGGDTKKTCV DCGTSRTPLW RGGPAGPKSL CNACGIKSRK KRQAALGIRQ DDIKIKSKSN NNLGLESRNV
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.