Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04307 | Sorghum | nucleus | 76.41 | 68.66 |
| Os01t0976800-01 | Rice | nucleus | 41.54 | 57.04 |
| KRH68462 | Soybean | cytosol | 23.08 | 56.25 |
| Solyc09g075610.2.1 | Tomato | plastid | 23.08 | 50.56 |
| Zm00001d034751_P001 | Maize | nucleus | 39.49 | 47.24 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 19.49 | 45.78 |
| PGSC0003DMT400081417 | Potato | nucleus | 24.62 | 45.28 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 28.21 | 44.35 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 27.69 | 43.55 |
| CDX85400 | Canola | nucleus | 27.69 | 42.52 |
| CDY25008 | Canola | nucleus | 21.54 | 42.0 |
| Bra009926.1-P | Field mustard | cytosol | 16.92 | 41.77 |
| CDY05639 | Canola | nucleus | 27.69 | 41.22 |
| Bra037421.1-P | Field mustard | nucleus | 26.67 | 40.94 |
| CDX86241 | Canola | nucleus | 26.67 | 40.94 |
| Bra020650.1-P | Field mustard | nucleus | 29.23 | 40.71 |
| CDY33918 | Canola | nucleus | 29.23 | 40.43 |
| CDX87024 | Canola | nucleus | 21.03 | 39.81 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 30.26 | 39.6 |
| KRH02314 | Soybean | nucleus | 28.21 | 39.29 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 30.77 | 39.22 |
| AT3G06740.1 | Thale cress | nucleus | 29.74 | 38.93 |
| AT5G49300.1 | Thale cress | cytosol | 27.69 | 38.85 |
| Bra040288.1-P | Field mustard | nucleus | 27.69 | 38.85 |
| CDY34933 | Canola | nucleus | 27.69 | 38.57 |
| PGSC0003DMT400063771 | Potato | nucleus | 29.74 | 38.41 |
| Solyc01g100220.2.1 | Tomato | nucleus | 29.23 | 38.26 |
| CDX90545 | Canola | nucleus | 28.72 | 38.1 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 27.69 | 38.03 |
| Bra036600.1-P | Field mustard | nucleus | 20.0 | 37.86 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 23.59 | 36.51 |
| Zm00001d037605_P001 | Maize | nucleus | 26.67 | 36.36 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 26.15 | 35.92 |
| AT5G26930.1 | Thale cress | cytosol | 22.05 | 35.83 |
| KRH50773 | Soybean | nucleus | 28.72 | 35.44 |
| Bra012742.1-P | Field mustard | nucleus | 29.74 | 34.73 |
| CDY34429 | Canola | cytosol | 27.18 | 34.64 |
| PGSC0003DMT400011779 | Potato | nucleus | 29.74 | 34.52 |
| Solyc12g099370.1.1 | Tomato | nucleus | 29.74 | 34.52 |
| CDY09717 | Canola | nucleus | 29.74 | 32.77 |
| CDY68751 | Canola | cytosol, mitochondrion | 16.92 | 32.67 |
| CDY34981 | Canola | nucleus | 28.21 | 32.16 |
| Bra021209.1-P | Field mustard | nucleus | 28.21 | 32.16 |
| Solyc05g054400.2.1 | Tomato | nucleus | 31.79 | 31.47 |
| CDX92103 | Canola | nucleus | 26.67 | 31.33 |
| CDY52723 | Canola | nucleus | 28.72 | 31.11 |
| PGSC0003DMT400060241 | Potato | nucleus | 31.28 | 30.96 |
| Zm00001d009193_P001 | Maize | plastid | 22.05 | 30.94 |
| Bra022184.1-P | Field mustard | nucleus | 26.15 | 30.72 |
| CDX95897 | Canola | nucleus | 25.64 | 30.49 |
| Bra033533.1-P | Field mustard | nucleus | 27.69 | 30.17 |
| CDY32214 | Canola | nucleus | 27.69 | 30.17 |
| AT3G16870.1 | Thale cress | nucleus | 29.23 | 30.0 |
| CDX82388 | Canola | nucleus | 26.67 | 29.89 |
| CDX75893 | Canola | nucleus | 27.18 | 28.96 |
| Zm00001d040775_P001 | Maize | nucleus | 21.54 | 28.57 |
| AT4G16141.1 | Thale cress | cytosol | 28.72 | 28.43 |
| CDX80603 | Canola | nucleus | 21.03 | 27.89 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 20.0 | 16.74 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 16.41 | 15.76 |
| Zm00001d046354_P001 | Maize | nucleus | 26.67 | 14.05 |
| Zm00001d009668_P001 | Maize | mitochondrion, nucleus | 18.97 | 13.7 |
| Zm00001d016361_P001 | Maize | nucleus | 25.13 | 13.24 |
| Zm00001d039113_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 17.44 | 11.97 |
Protein Annotations
| EntrezGene:100284189 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | ProteinID:AQK97966.1 | UniProt:B6TR29 | EMBL:EU967444 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF279 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000182D39B |
| EnsemblPlantsGene:Zm00001d011771 | EnsemblPlants:Zm00001d011771_P001 | EnsemblPlants:Zm00001d011771_T001 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg |
Description
C2C2-GATA-transcription factor 17GATA zinc finger family protein
Coordinates
chr8:+:161288497..161289891
Molecular Weight (calculated)
21240.1 Da
IEP (calculated)
10.309
GRAVY (calculated)
-0.839
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMEIDMETY PNLNTSPSAA TASGDAKACA NCHTTKTSLW RGGPEGPKSL CNACGIRYRK RRQAIGLDAG AAAAANSQQD LQQPKKKAAV DPQQQDQHQL
101: RKKTTAVANP QQDRHQPRKR AAAAAAATDP QHTSITKKDT DKKDQQVTVD LHVVGFGKEA TFKQRRRMRH NKCMSEEERA AVLLMALSSG VIYAS
101: RKKTTAVANP QQDRHQPRKR AAAAAAATDP QHTSITKKDT DKKDQQVTVD LHVVGFGKEA TFKQRRRMRH NKCMSEEERA AVLLMALSSG VIYAS
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.