Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d009604_P001 | nucleus, nucleus |
| Zm00001d016361_P001 | nucleus, nucleus |
| Zm00001d043969_P001 | nucleus, nucleus |
| Zm00001d046354_P001 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 65.52 | 58.08 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 58.13 | 47.2 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 52.22 | 45.49 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 41.87 | 40.28 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 43.84 | 38.2 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 42.86 | 37.5 |
| KRH30068 | Soybean | plastid | 26.11 | 33.97 |
| AT4G36620.1 | Thale cress | cytosol | 32.51 | 31.28 |
| CDY53079 | Canola | cytosol | 31.53 | 30.92 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 36.45 | 30.83 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.69 | 30.66 |
| Bra010563.1-P | Field mustard | cytosol | 31.53 | 30.05 |
| CDY60289 | Canola | nucleus | 29.56 | 29.7 |
| Bra017766.1-P | Field mustard | nucleus | 27.59 | 29.63 |
| CDY69687 | Canola | nucleus | 27.59 | 29.63 |
| CDX72587 | Canola | cytosol | 33.0 | 29.52 |
| CDY13040 | Canola | cytosol | 28.57 | 29.15 |
| CDY24779 | Canola | nucleus | 30.54 | 29.11 |
| CDY72649 | Canola | nucleus | 28.57 | 29.0 |
| KRH28681 | Soybean | nucleus | 34.98 | 28.98 |
| Zm00001d009668_P001 | Maize | mitochondrion, nucleus | 38.42 | 28.89 |
| CDY51221 | Canola | nucleus | 28.08 | 28.36 |
| Bra011695.1-P | Field mustard | nucleus | 31.03 | 28.25 |
| CDY70754 | Canola | nucleus | 31.03 | 28.25 |
| PGSC0003DMT400009031 | Potato | plastid | 33.99 | 27.94 |
| CDY68627 | Canola | nucleus | 30.54 | 27.93 |
| CDX77958 | Canola | nucleus | 35.96 | 27.44 |
| AT2G18380.1 | Thale cress | cytosol | 28.08 | 27.4 |
| CDX69237 | Canola | nucleus | 30.05 | 27.35 |
| CDY30768 | Canola | nucleus | 30.54 | 27.19 |
| CDY45238 | Canola | nucleus | 31.03 | 26.69 |
| Bra012080.1-P | Field mustard | nucleus | 31.03 | 26.69 |
| KRH08269 | Soybean | nucleus | 33.0 | 26.69 |
| KRH69915 | Soybean | nucleus | 33.0 | 26.59 |
| Solyc02g085190.1.1 | Tomato | plastid | 33.0 | 26.59 |
| KRH43324 | Soybean | nucleus | 17.73 | 26.47 |
| Zm00001d039113_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 36.95 | 26.41 |
| Bra036854.1-P | Field mustard | nucleus | 35.96 | 25.26 |
| CDX73777 | Canola | nucleus | 35.96 | 25.17 |
| Bra012883.1-P | Field mustard | nucleus | 33.99 | 24.82 |
| CDX90680 | Canola | nucleus | 33.99 | 24.82 |
| CDY28986 | Canola | cytosol | 33.5 | 24.82 |
| Solyc02g062760.2.1 | Tomato | nucleus | 31.03 | 24.8 |
| PGSC0003DMT400040074 | Potato | nucleus | 30.05 | 24.6 |
| AT3G50870.1 | Thale cress | cytosol | 34.98 | 24.07 |
| Bra037221.1-P | Field mustard | nucleus | 26.6 | 22.78 |
| Zm00001d037605_P001 | Maize | nucleus | 15.76 | 22.38 |
| Zm00001d009193_P001 | Maize | plastid | 15.27 | 22.3 |
| Zm00001d040775_P001 | Maize | nucleus | 15.27 | 21.09 |
| Zm00001d034751_P001 | Maize | nucleus | 14.29 | 17.79 |
| Zm00001d011771_P001 | Maize | nucleus | 15.76 | 16.41 |
| Zm00001d016361_P001 | Maize | nucleus | 21.18 | 11.62 |
| Zm00001d046354_P001 | Maize | nucleus | 19.7 | 10.81 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | UniProt:A0A1D6FKM8 | ProteinID:AQK92269.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 |
| InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI00084441BC | EnsemblPlantsGene:Zm00001d009604 | EnsemblPlants:Zm00001d009604_P001 |
| EnsemblPlants:Zm00001d009604_T001 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : |
Description
C2C2-GATA-transcription factor 21GATA transcription factor 19
Coordinates
chr8:-:72785057..72785843
Molecular Weight (calculated)
21778.8 Da
IEP (calculated)
8.689
GRAVY (calculated)
-0.504
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQKELPRCA CGDRSAAPPA FSLLFPKPMG LPAEQWYCYH EEGGASPYGA ASTPIDCTLS LGTPSTRRAE SAGVGVAAAL MEEPRQGSPP RRCANCDTTS
101: TPLWRNGPRG PKSLCNACGI RYKKEERRRR TSAAGTLDRR APPQQQWGCY GPGAGKSAAS YGMYDGDVGV VAVDGPCLSW MLEVVPSSPA FAARERRTLS
201: PYY
101: TPLWRNGPRG PKSLCNACGI RYKKEERRRR TSAAGTLDRR APPQQQWGCY GPGAGKSAAS YGMYDGDVGV VAVDGPCLSW MLEVVPSSPA FAARERRTLS
201: PYY
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.