CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69915	Soybean	nucleus	87.25	86.9
KRH30068	Soybean	plastid	43.43	69.87
KRH28681	Soybean	nucleus	68.13	69.8
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	54.98	57.5
PGSC0003DMT400009031	Potato	plastid	53.78	54.66
Solyc02g085190.1.1	Tomato	plastid	52.99	52.78
KRH43324	Soybean	nucleus	20.72	38.24
KRH68462	Soybean	cytosol	11.95	37.5
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	32.67	36.61
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	33.47	36.21
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	33.07	36.09
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	33.07	35.78
Zm00001d043969_P001	Maize	endoplasmic reticulum	33.07	35.62
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	33.07	35.47
KXG33047	Sorghum	extracellular	33.86	34.84
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	33.47	34.71
GSMUA_Achr7P25620_001	Banana	nucleus	31.87	34.33
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	28.29	33.65
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	26.69	33.0
KRG96744	Soybean	cytosol, mitochondrion, nucleus	10.76	32.53
Os05t0567900-00	Rice	cytosol, extracellular, plastid	31.87	32.0
EES19963	Sorghum	mitochondrion, nucleus, vacuole	29.08	31.88
KRH02314	Soybean	nucleus	13.94	25.0
KRH50773	Soybean	nucleus	13.94	22.15
KRH19153	Soybean	nucleus	25.5	20.38
KRH02716	Soybean	nucleus	23.9	18.63
KRH12382	Soybean	nucleus	21.51	17.14
KRH61505	Soybean	nucleus	18.73	16.1
KRH37384	Soybean	nucleus	21.51	16.02
KRH15535	Soybean	nucleus	18.73	15.36
KRH05458	Soybean	nucleus	18.33	15.03

Protein Annotations

EntrezGene:100801623	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02010156	EnsemblPlantsGene:GLYMA_16G139400	GO:GO:0000977
GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	UniProt:I1MNF7	InterPro:IPR000679	InterPro:IPR013088	EnsemblPlants:KRH08269
ProteinID:KRH08269	ProteinID:KRH08269.1	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000233F343	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:29672011..29674023

Molecular Weight (calculated)

28103.3 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.963

Length

251 amino acids

Sequence
(BLAST)

001: MMHHCCGSSQ GHVMGTCTCG MYHSETSAYG SMLFSVPNNS EYDMYSSFTP SPSSVDCTLS LGTPSTRLTQ DDDHDNDNKR HPHQRRSGVA NFCWDLLHSK
101: HNNNNTQSQS KSSSRGSSSN NNNNNDPLLA RRCANCDTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAS AAAATSTAVP EGEMELARVY GHHHNNSWYA
201: AHSQNQKMMM MGNELRFMDD SEDRDSENNG IPFLSWKLNV PDRTSLVDER W

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.