Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P31070_001 | nucleus, nucleus |
| GSMUA_Achr6P27250_001 | nucleus, nucleus |
| GSMUA_Achr7P25620_001 | nucleus, nucleus |
| GSMUA_Achr8P24880_001 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P25620_001 | Banana | nucleus | 71.56 | 64.81 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 58.77 | 53.45 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 40.28 | 41.87 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 44.08 | 40.09 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 42.18 | 39.73 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 43.13 | 39.57 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 43.13 | 39.06 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 42.65 | 38.46 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 44.08 | 38.43 |
| KXG33047 | Sorghum | extracellular | 43.6 | 37.7 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 44.55 | 37.6 |
| KRH30068 | Soybean | plastid | 26.07 | 35.26 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 22.75 | 35.04 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 37.91 | 34.93 |
| CDY13040 | Canola | cytosol | 32.23 | 34.17 |
| CDY72649 | Canola | nucleus | 32.23 | 34.0 |
| CDY60289 | Canola | nucleus | 32.23 | 33.66 |
| CDY51221 | Canola | nucleus | 30.33 | 31.84 |
| GSMUA_Achr11P... | Banana | plastid | 17.54 | 31.36 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 34.6 | 30.42 |
| CDY30768 | Canola | nucleus | 32.7 | 30.26 |
| PGSC0003DMT400009031 | Potato | plastid | 35.07 | 29.96 |
| AT2G18380.1 | Thale cress | cytosol | 29.38 | 29.81 |
| Solyc02g085190.1.1 | Tomato | plastid | 35.55 | 29.76 |
| CDY69687 | Canola | nucleus | 26.54 | 29.63 |
| Bra017766.1-P | Field mustard | nucleus | 26.54 | 29.63 |
| CDY53079 | Canola | cytosol | 28.91 | 29.47 |
| KRH28681 | Soybean | nucleus | 34.12 | 29.39 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 17.06 | 29.03 |
| PGSC0003DMT400040074 | Potato | nucleus | 34.12 | 29.03 |
| AT4G36620.1 | Thale cress | cytosol | 28.91 | 28.91 |
| CDY45238 | Canola | nucleus | 32.23 | 28.81 |
| Bra012080.1-P | Field mustard | nucleus | 32.23 | 28.81 |
| CDY24779 | Canola | nucleus | 28.91 | 28.64 |
| Bra010563.1-P | Field mustard | cytosol | 28.91 | 28.64 |
| KRH08269 | Soybean | nucleus | 33.65 | 28.29 |
| KRH69915 | Soybean | nucleus | 33.65 | 28.17 |
| Solyc02g062760.2.1 | Tomato | nucleus | 33.18 | 27.56 |
| CDX77958 | Canola | nucleus | 34.6 | 27.44 |
| CDY70754 | Canola | nucleus | 28.91 | 27.35 |
| Bra011695.1-P | Field mustard | nucleus | 28.91 | 27.35 |
| CDY68627 | Canola | nucleus | 28.44 | 27.03 |
| CDX72587 | Canola | cytosol | 28.91 | 26.87 |
| CDY28986 | Canola | cytosol | 34.6 | 26.64 |
| Bra037221.1-P | Field mustard | nucleus | 29.86 | 26.58 |
| KRH43324 | Soybean | nucleus | 17.06 | 26.47 |
| CDX69237 | Canola | nucleus | 27.96 | 26.46 |
| Bra012883.1-P | Field mustard | nucleus | 34.12 | 25.9 |
| CDX90680 | Canola | nucleus | 34.12 | 25.9 |
| AT3G50870.1 | Thale cress | cytosol | 36.02 | 25.76 |
| Bra036854.1-P | Field mustard | nucleus | 35.07 | 25.61 |
| CDX73777 | Canola | nucleus | 34.6 | 25.17 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 14.69 | 24.6 |
| GSMUA_Achr7P09030_001 | Banana | nucleus | 17.54 | 23.72 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 16.59 | 23.49 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 15.64 | 23.24 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 15.17 | 22.54 |
| GSMUA_Achr10P... | Banana | mitochondrion | 20.85 | 22.0 |
| GSMUA_Achr2P16730_001 | Banana | nucleus | 19.43 | 19.71 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 18.01 | 17.43 |
| GSMUA_Achr2P15750_001 | Banana | plastid | 10.9 | 17.29 |
| GSMUA_Achr4P30820_001 | Banana | nucleus | 18.96 | 14.76 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G31070_001 | EnsemblPlants:GSMUA_Achr3P31070_001 |
| EnsemblPlants:GSMUA_Achr3T31070_001 | InterPro:IPR000679 | InterPro:IPR013088 | UniProt:M0SJC1 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0002951F80 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : | : |
Description
Putative GATA zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G31070_001]
Coordinates
chr3:+:29554447..29555226
Molecular Weight (calculated)
22171.4 Da
IEP (calculated)
8.258
GRAVY (calculated)
-0.601
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHRCGHQSS SYPCSCGSAY FSVVFPVTGK QSTDEDHDVA RSGCSSPSSV DCTLSLGTPS TRQTENKAAA AASSTISNAF YGGATNGSNF GGDPLLLARR
101: CANCDTTSTP LWRNGPRGPK SLCNACGIRY KKEERRTAAS MAPPSSSSPV TSAAGEKQLR SPWSCYDSSA TKGNSSIAMY DDDTAGHGEA SYLAPSPQFS
201: ARNRPSLSQY H
101: CANCDTTSTP LWRNGPRGPK SLCNACGIRY KKEERRTAAS MAPPSSSSPV TSAAGEKQLR SPWSCYDSSA TKGNSSIAMY DDDTAGHGEA SYLAPSPQFS
201: ARNRPSLSQY H
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.