Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45238 | Canola | nucleus | 91.67 | 88.56 |
| Bra012080.1-P | Field mustard | nucleus | 91.67 | 88.56 |
| CDY72649 | Canola | nucleus | 33.33 | 38.0 |
| CDX77958 | Canola | nucleus | 43.86 | 37.59 |
| CDY13040 | Canola | cytosol | 32.46 | 37.19 |
| CDY53079 | Canola | cytosol | 33.33 | 36.72 |
| CDY69687 | Canola | nucleus | 29.82 | 35.98 |
| CDX73777 | Canola | nucleus | 45.18 | 35.52 |
| PGSC0003DMT400009031 | Potato | plastid | 38.16 | 35.22 |
| CDY28986 | Canola | cytosol | 42.11 | 35.04 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 36.84 | 35.0 |
| CDY60289 | Canola | nucleus | 30.7 | 34.65 |
| CDX90680 | Canola | nucleus | 42.11 | 34.53 |
| CDY51221 | Canola | nucleus | 30.26 | 34.33 |
| Solyc02g085190.1.1 | Tomato | plastid | 37.72 | 34.13 |
| CDY24779 | Canola | nucleus | 31.58 | 33.8 |
| KRH43324 | Soybean | nucleus | 19.74 | 33.09 |
| CDY68627 | Canola | nucleus | 32.02 | 32.88 |
| CDY70754 | Canola | nucleus | 32.02 | 32.74 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 30.26 | 32.7 |
| PGSC0003DMT400040074 | Potato | nucleus | 35.53 | 32.66 |
| CDX72587 | Canola | cytosol | 32.46 | 32.6 |
| CDX69237 | Canola | nucleus | 31.58 | 32.29 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 32.89 | 32.19 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 32.46 | 31.9 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 27.19 | 30.54 |
| Solyc02g062760.2.1 | Tomato | nucleus | 33.77 | 30.32 |
| CDX87024 | Canola | nucleus | 13.6 | 30.1 |
| CDY25008 | Canola | nucleus | 13.16 | 30.0 |
| CDY68751 | Canola | cytosol, mitochondrion | 12.72 | 28.71 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 26.32 | 26.79 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 27.19 | 26.61 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 28.95 | 26.4 |
| KXG33047 | Sorghum | extracellular | 28.07 | 26.23 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 26.32 | 26.09 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 26.75 | 26.07 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 26.32 | 25.86 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 25.88 | 25.76 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 26.75 | 25.21 |
| CDX85400 | Canola | nucleus | 12.72 | 22.83 |
| CDX86241 | Canola | nucleus | 12.72 | 22.83 |
| CDY34933 | Canola | nucleus | 13.6 | 22.14 |
| CDY05639 | Canola | nucleus | 12.28 | 21.37 |
| CDY33918 | Canola | nucleus | 13.16 | 21.28 |
| CDX92103 | Canola | nucleus | 14.04 | 19.28 |
| CDX80603 | Canola | nucleus | 12.28 | 19.05 |
| CDY34429 | Canola | cytosol | 12.72 | 18.95 |
| CDX95897 | Canola | nucleus | 13.6 | 18.9 |
| CDX90545 | Canola | nucleus | 11.84 | 18.37 |
| CDX75893 | Canola | nucleus | 13.16 | 16.39 |
| CDY34981 | Canola | nucleus | 12.28 | 16.37 |
| CDY32214 | Canola | nucleus | 12.72 | 16.2 |
| CDY52723 | Canola | nucleus | 12.72 | 16.11 |
| CDX82388 | Canola | nucleus | 12.28 | 16.09 |
| CDY09717 | Canola | nucleus | 12.28 | 15.82 |
| CDY42753 | Canola | nucleus | 17.54 | 10.81 |
| CDY42752 | Canola | nucleus | 17.54 | 10.81 |
| CDY67979 | Canola | nucleus | 18.42 | 10.71 |
| CDX88593 | Canola | nucleus | 16.67 | 10.7 |
| CDY20709 | Canola | nucleus | 18.42 | 10.66 |
| CDY67546 | Canola | nucleus | 17.11 | 10.37 |
| CDY65439 | Canola | nucleus | 16.67 | 9.9 |
| CDY32891 | Canola | nucleus | 16.67 | 9.79 |
| CDX94365 | Canola | nucleus | 15.35 | 9.72 |
| CDX89358 | Canola | nucleus | 15.35 | 9.72 |
| CDY32755 | Canola | nucleus | 15.79 | 9.3 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078H1T3 | UniProt:A0A078H1T3 | EnsemblPlants:CDY30768 | ProteinID:CDY30768 |
| ProteinID:CDY30768.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00046195001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EEB3D5 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC07g16680DBnaC07g16680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1T3]
Coordinates
chrLK032260:+:193924..194803
Molecular Weight (calculated)
25114.8 Da
IEP (calculated)
8.623
GRAVY (calculated)
-0.924
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQGRYCESC GWFHEHTQTC LFVHNGNGCS NTQTAVVDCT LSLGPPSTTT TRLSERDKKK MRQSSTSSRV SSFTDTDKNT SKTSTYSVLP SSNRRISGGG
101: DTLLDRRCTN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRTMDTTRM TASSTVAQDL HGHHPSSYSN HNNATDQSGS STCNFVASEI MLNHDYGGAG
201: EYYRRNPVDG VNGLPSHSWR CRGYGNES
101: DTLLDRRCTN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRTMDTTRM TASSTVAQDL HGHHPSSYSN HNNATDQSGS STCNFVASEI MLNHDYGGAG
201: EYYRRNPVDG VNGLPSHSWR CRGYGNES
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.