Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69237 | Canola | nucleus | 98.2 | 97.76 |
| Bra011695.1-P | Field mustard | nucleus | 95.5 | 95.07 |
| CDY70754 | Canola | nucleus | 95.5 | 95.07 |
| CDY69687 | Canola | nucleus | 71.62 | 84.13 |
| CDX72587 | Canola | cytosol | 81.53 | 79.74 |
| CDY24779 | Canola | nucleus | 76.13 | 79.34 |
| CDY53079 | Canola | cytosol | 72.52 | 77.78 |
| CDY60289 | Canola | nucleus | 44.14 | 48.51 |
| CDY72649 | Canola | nucleus | 43.69 | 48.5 |
| CDY51221 | Canola | nucleus | 43.24 | 47.76 |
| CDY13040 | Canola | cytosol | 42.79 | 47.74 |
| CDY28986 | Canola | cytosol | 51.8 | 41.97 |
| CDX77958 | Canola | nucleus | 49.1 | 40.98 |
| PGSC0003DMT400009031 | Potato | plastid | 45.5 | 40.89 |
| CDX90680 | Canola | nucleus | 50.9 | 40.65 |
| Solyc02g085190.1.1 | Tomato | plastid | 45.5 | 40.08 |
| CDX73777 | Canola | nucleus | 52.25 | 40.0 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 40.99 | 37.92 |
| CDY45238 | Canola | nucleus | 36.94 | 34.75 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 34.23 | 32.76 |
| PGSC0003DMT400040074 | Potato | nucleus | 36.49 | 32.66 |
| CDY30768 | Canola | nucleus | 32.88 | 32.02 |
| Solyc02g062760.2.1 | Tomato | nucleus | 36.04 | 31.5 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 27.93 | 30.54 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 31.98 | 30.47 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 30.63 | 30.36 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 31.53 | 30.04 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 31.08 | 30.0 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 31.08 | 29.74 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 31.08 | 29.49 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 32.43 | 28.8 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 27.03 | 28.44 |
| KXG33047 | Sorghum | extracellular | 31.08 | 28.28 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 28.83 | 27.95 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 30.18 | 27.69 |
| KRH43324 | Soybean | nucleus | 16.67 | 27.21 |
| CDX87024 | Canola | nucleus | 12.61 | 27.18 |
| CDY25008 | Canola | nucleus | 12.16 | 27.0 |
| CDX85400 | Canola | nucleus | 14.86 | 25.98 |
| CDY68751 | Canola | cytosol, mitochondrion | 11.71 | 25.74 |
| CDX86241 | Canola | nucleus | 14.41 | 25.2 |
| CDY05639 | Canola | nucleus | 14.86 | 25.19 |
| CDY33918 | Canola | nucleus | 14.41 | 22.7 |
| CDY34933 | Canola | nucleus | 13.96 | 22.14 |
| CDX95897 | Canola | nucleus | 15.32 | 20.73 |
| CDX92103 | Canola | nucleus | 15.32 | 20.48 |
| CDY34429 | Canola | cytosol | 13.96 | 20.26 |
| CDX82388 | Canola | nucleus | 14.41 | 18.39 |
| CDX90545 | Canola | nucleus | 12.16 | 18.37 |
| CDX75893 | Canola | nucleus | 14.86 | 18.03 |
| CDX80603 | Canola | nucleus | 11.71 | 17.69 |
| CDY34981 | Canola | nucleus | 13.51 | 17.54 |
| CDY32214 | Canola | nucleus | 13.96 | 17.32 |
| CDY52723 | Canola | nucleus | 13.96 | 17.22 |
| CDY09717 | Canola | nucleus | 13.51 | 16.95 |
| CDY42753 | Canola | nucleus | 22.52 | 13.51 |
| CDY42752 | Canola | nucleus | 22.52 | 13.51 |
| CDX88593 | Canola | nucleus | 21.17 | 13.24 |
| CDY67546 | Canola | nucleus | 22.07 | 13.03 |
| CDY67979 | Canola | nucleus | 22.07 | 12.5 |
| CDY20709 | Canola | nucleus | 22.07 | 12.44 |
| CDY65439 | Canola | nucleus | 21.17 | 12.24 |
| CDX94365 | Canola | nucleus | 19.37 | 11.94 |
| CDX89358 | Canola | nucleus | 18.92 | 11.67 |
| CDY32755 | Canola | nucleus | 20.27 | 11.63 |
| CDY32891 | Canola | nucleus | 19.82 | 11.34 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078JT75 | UniProt:A0A078JT75 | EnsemblPlants:CDY68627 | ProteinID:CDY68627 |
| ProteinID:CDY68627.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00076493001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EE580C | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC01g40720DBnaC01g40720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT75]
Coordinates
chrLK037685:+:2008..3167
Molecular Weight (calculated)
24504.7 Da
IEP (calculated)
7.168
GRAVY (calculated)
-0.860
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSMFSSEN DVVHHHSSPY ASVDCTLSLG TPSTRLFNDD DDRRFSTHTS NNISNALGSW DFLHGGKKAG GGGGNNLVAR HCASCDTTST PLWRNGPRGP
101: KSLCNACGIR FKKEERRASA AGNSTSGGGL TDFGIPASDH HGGADYYYNN NSNNNHYYAS SSPWTHHQQQ NTQRVPYYSP ANNNEYSFVD DVRERHDITT
201: DPFLSWRLNV ADRTRLVHDC TM
101: KSLCNACGIR FKKEERRASA AGNSTSGGGL TDFGIPASDH HGGADYYYNN NSNNNHYYAS SSPWTHHQQQ NTQRVPYYSP ANNNEYSFVD DVRERHDITT
201: DPFLSWRLNV ADRTRLVHDC TM
001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M
Arabidopsis Description
GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.