Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012742.1-P | Field mustard | nucleus | 97.96 | 86.23 |
| CDY09717 | Canola | nucleus | 93.2 | 77.4 |
| CDY34429 | Canola | cytosol | 80.27 | 77.12 |
| CDY32214 | Canola | nucleus | 82.99 | 68.16 |
| CDX95897 | Canola | nucleus | 69.39 | 62.2 |
| CDY34981 | Canola | nucleus | 71.43 | 61.4 |
| CDX92103 | Canola | nucleus | 66.67 | 59.04 |
| CDY52723 | Canola | nucleus | 71.43 | 58.33 |
| CDX82388 | Canola | nucleus | 68.71 | 58.05 |
| CDX75893 | Canola | nucleus | 68.71 | 55.19 |
| CDY05639 | Canola | nucleus | 42.18 | 47.33 |
| CDX86241 | Canola | nucleus | 40.82 | 47.24 |
| CDX85400 | Canola | nucleus | 40.82 | 47.24 |
| CDY33918 | Canola | nucleus | 42.18 | 43.97 |
| CDX87024 | Canola | nucleus | 28.57 | 40.78 |
| CDY25008 | Canola | nucleus | 27.21 | 40.0 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 31.97 | 37.9 |
| CDY34933 | Canola | nucleus | 36.05 | 37.86 |
| Solyc12g099370.1.1 | Tomato | nucleus | 41.5 | 36.31 |
| PGSC0003DMT400011779 | Potato | nucleus | 41.5 | 36.31 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 36.73 | 36.24 |
| Os01t0976800-01 | Rice | nucleus | 34.01 | 35.21 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 29.25 | 34.13 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 36.73 | 33.33 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 31.97 | 33.1 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.29 | 32.39 |
| Zm00001d037605_P001 | Maize | nucleus | 31.29 | 32.17 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 35.37 | 32.1 |
| KXG32453 | Sorghum | nucleus | 27.21 | 32.0 |
| EER93149 | Sorghum | nucleus | 34.01 | 31.85 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 36.05 | 31.74 |
| CDY68751 | Canola | cytosol, mitochondrion | 21.77 | 31.68 |
| Os01t0343300-01 | Rice | nucleus | 27.89 | 31.3 |
| Solyc05g054400.2.1 | Tomato | nucleus | 41.5 | 30.96 |
| Zm00001d034751_P001 | Maize | nucleus | 34.01 | 30.67 |
| PGSC0003DMT400060241 | Potato | nucleus | 40.82 | 30.46 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 34.69 | 30.36 |
| Zm00001d009193_P001 | Maize | plastid | 27.89 | 29.5 |
| Zm00001d011771_P001 | Maize | nucleus | 38.1 | 28.72 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 34.69 | 28.49 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 34.69 | 28.33 |
| KXG21349 | Sorghum | cytosol | 29.93 | 28.21 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 27.89 | 28.08 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 27.89 | 28.08 |
| EES04307 | Sorghum | nucleus | 40.82 | 27.65 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 34.01 | 27.62 |
| CDX80603 | Canola | nucleus | 27.21 | 27.21 |
| Zm00001d040775_P001 | Maize | nucleus | 27.21 | 27.21 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 24.49 | 26.87 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 28.57 | 26.42 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 29.93 | 22.8 |
| HORVU1Hr1G022710.3 | Barley | plastid | 28.57 | 19.44 |
| CDY13040 | Canola | cytosol | 20.41 | 15.08 |
| CDY72649 | Canola | nucleus | 20.41 | 15.0 |
| CDY51221 | Canola | nucleus | 19.73 | 14.43 |
| CDY60289 | Canola | nucleus | 19.73 | 14.36 |
| CDY53079 | Canola | cytosol | 19.73 | 14.01 |
| CDY69687 | Canola | nucleus | 17.01 | 13.23 |
| CDX89358 | Canola | nucleus | 31.97 | 13.06 |
| CDX94365 | Canola | nucleus | 31.97 | 13.06 |
| CDY24779 | Canola | nucleus | 17.69 | 12.21 |
| CDY42752 | Canola | nucleus | 30.61 | 12.16 |
| CDY68627 | Canola | nucleus | 18.37 | 12.16 |
| CDY42753 | Canola | nucleus | 30.61 | 12.16 |
| CDX69237 | Canola | nucleus | 18.37 | 12.11 |
| CDY70754 | Canola | nucleus | 18.37 | 12.11 |
| CDY67546 | Canola | nucleus | 30.61 | 11.97 |
| CDX72587 | Canola | cytosol | 18.37 | 11.89 |
| CDY45238 | Canola | nucleus | 19.05 | 11.86 |
| CDY30768 | Canola | nucleus | 18.37 | 11.84 |
| CDX88593 | Canola | nucleus | 28.57 | 11.83 |
| CDY32755 | Canola | nucleus | 29.25 | 11.11 |
| CDY32891 | Canola | nucleus | 29.25 | 11.08 |
| CDY67979 | Canola | nucleus | 29.25 | 10.97 |
| CDY28986 | Canola | cytosol | 20.41 | 10.95 |
| CDY20709 | Canola | nucleus | 29.25 | 10.91 |
| CDX77958 | Canola | nucleus | 19.73 | 10.9 |
| CDY65439 | Canola | nucleus | 27.89 | 10.68 |
| CDX90680 | Canola | nucleus | 19.73 | 10.43 |
| CDX73777 | Canola | nucleus | 19.05 | 9.66 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078DN35 | EnsemblPlants:CDX90545 | ProteinID:CDX90545 | ProteinID:CDX90545.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00151174001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EEE343 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaA03g42360D
Coordinates
chrLK031863:+:766897..768001
Molecular Weight (calculated)
15825.9 Da
IEP (calculated)
9.670
GRAVY (calculated)
-0.839
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMTEETKTT KLESAGETSD VENGNCSSSG SGGDTKKTCV DCGTSKTPLW RGGPAGPKSL CNACGIKSRK KRQAAHGIKQ EDNNNKIKKN KSSNDLALDD
101: QTVKSKIKTG TEDLPVMKRS VVEKKRLWMK MGEEERAAVL LMALSCG
101: QTVKSKIKTG TEDLPVMKRS VVEKKRLWMK MGEEERAAVL LMALSCG
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.