Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60289 | Canola | nucleus | 96.52 | 96.04 |
| CDY13040 | Canola | cytosol | 81.09 | 81.91 |
| CDY72649 | Canola | nucleus | 80.6 | 81.0 |
| AT2G18380.1 | Thale cress | cytosol | 80.6 | 77.88 |
| Bra037221.1-P | Field mustard | nucleus | 79.6 | 67.51 |
| CDY69687 | Canola | nucleus | 44.78 | 47.62 |
| CDX69237 | Canola | nucleus | 48.26 | 43.5 |
| CDY53079 | Canola | cytosol | 44.78 | 43.48 |
| CDY68627 | Canola | nucleus | 47.76 | 43.24 |
| CDY24779 | Canola | nucleus | 45.77 | 43.19 |
| CDY70754 | Canola | nucleus | 47.76 | 43.05 |
| CDX72587 | Canola | cytosol | 46.77 | 41.41 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 42.29 | 35.42 |
| PGSC0003DMT400040074 | Potato | nucleus | 40.8 | 33.06 |
| Solyc02g085190.1.1 | Tomato | plastid | 41.29 | 32.94 |
| PGSC0003DMT400009031 | Potato | plastid | 39.8 | 32.39 |
| CDX77958 | Canola | nucleus | 42.79 | 32.33 |
| Solyc02g062760.2.1 | Tomato | nucleus | 40.8 | 32.28 |
| CDY28986 | Canola | cytosol | 43.28 | 31.75 |
| CDX73777 | Canola | nucleus | 44.78 | 31.03 |
| CDX90680 | Canola | nucleus | 42.29 | 30.58 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 31.84 | 30.33 |
| CDY30768 | Canola | nucleus | 34.33 | 30.26 |
| CDY45238 | Canola | nucleus | 34.83 | 29.66 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 33.33 | 28.76 |
| KRH43324 | Soybean | nucleus | 19.4 | 28.68 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 32.84 | 28.45 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 32.34 | 28.26 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 31.34 | 28.12 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 28.36 | 28.08 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 32.34 | 28.02 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 32.34 | 27.78 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 31.84 | 27.47 |
| KXG33047 | Sorghum | extracellular | 31.84 | 26.23 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 31.34 | 26.03 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 29.35 | 25.76 |
| CDY68751 | Canola | cytosol, mitochondrion | 12.94 | 25.74 |
| CDX87024 | Canola | nucleus | 12.94 | 25.24 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 31.34 | 25.2 |
| CDY25008 | Canola | nucleus | 12.44 | 25.0 |
| CDX85400 | Canola | nucleus | 14.93 | 23.62 |
| CDX86241 | Canola | nucleus | 14.93 | 23.62 |
| CDY05639 | Canola | nucleus | 14.43 | 22.14 |
| CDY34933 | Canola | nucleus | 14.93 | 21.43 |
| CDY33918 | Canola | nucleus | 14.93 | 21.28 |
| CDX95897 | Canola | nucleus | 16.92 | 20.73 |
| CDX92103 | Canola | nucleus | 16.92 | 20.48 |
| CDY34429 | Canola | cytosol | 15.42 | 20.26 |
| CDX90545 | Canola | nucleus | 14.43 | 19.73 |
| CDY34981 | Canola | nucleus | 15.42 | 18.13 |
| CDX75893 | Canola | nucleus | 16.42 | 18.03 |
| CDX82388 | Canola | nucleus | 15.42 | 17.82 |
| CDY52723 | Canola | nucleus | 15.92 | 17.78 |
| CDY09717 | Canola | nucleus | 15.42 | 17.51 |
| CDY32214 | Canola | nucleus | 15.42 | 17.32 |
| CDX80603 | Canola | nucleus | 11.94 | 16.33 |
| CDY42753 | Canola | nucleus | 20.9 | 11.35 |
| CDY42752 | Canola | nucleus | 20.9 | 11.35 |
| CDX88593 | Canola | nucleus | 19.9 | 11.27 |
| CDY32755 | Canola | nucleus | 21.39 | 11.11 |
| CDY32891 | Canola | nucleus | 21.39 | 11.08 |
| CDY67546 | Canola | nucleus | 20.4 | 10.9 |
| CDY65439 | Canola | nucleus | 19.9 | 10.42 |
| CDY20709 | Canola | nucleus | 20.4 | 10.41 |
| CDY67979 | Canola | nucleus | 19.9 | 10.2 |
| CDX94365 | Canola | nucleus | 16.92 | 9.44 |
| CDX89358 | Canola | nucleus | 16.42 | 9.17 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078IMK8 | UniProt:A0A078IMK8 | EnsemblPlants:CDY51221 | ProteinID:CDY51221 |
| ProteinID:CDY51221.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00002980001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EC9C2D | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC09g09760DBnaC09g09760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMK8]
Coordinates
chrLK032976:-:66357..67436
Molecular Weight (calculated)
22168.2 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.875
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGYQTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDKHR RFSSANSNNI SGDFFFHGGS AKTTSYKKSG SEHNLPRRCA SCDTSSTPLW
101: RNGPKGPKSL CNACGIRFKK EEKRAAARNS ITSGGGSSVA EVPAENPYNG GGNYYTHHHH ASSSPSWAHQ NTQRVQYFSP APEMEYPFVD DVTAASFMSW
201: N
101: RNGPKGPKSL CNACGIRFKK EEKRAAARNS ITSGGGSSVA EVPAENPYNG GGNYYTHHHH ASSSPSWAHQ NTQRVQYFSP APEMEYPFVD DVTAASFMSW
201: N
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.