Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- extracellular 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P31070_001 | nucleus, nucleus |
| GSMUA_Achr6P27250_001 | nucleus, nucleus |
| GSMUA_Achr7P25620_001 | nucleus, nucleus |
| GSMUA_Achr8P24880_001 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P25620_001 | Banana | nucleus | 63.79 | 63.52 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 53.45 | 58.77 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 46.98 | 48.66 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 48.28 | 48.28 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 47.84 | 48.26 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 47.84 | 47.44 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 46.98 | 46.78 |
| KXG33047 | Sorghum | extracellular | 47.41 | 45.08 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 46.12 | 44.21 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 37.5 | 42.86 |
| KRH30068 | Soybean | plastid | 27.59 | 41.03 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 40.09 | 40.61 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 43.53 | 40.4 |
| CDY53079 | Canola | cytosol | 32.33 | 36.23 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 21.12 | 35.77 |
| Bra010563.1-P | Field mustard | cytosol | 32.76 | 35.68 |
| CDY13040 | Canola | cytosol | 30.6 | 35.68 |
| AT4G36620.1 | Thale cress | cytosol | 32.33 | 35.55 |
| KRH28681 | Soybean | nucleus | 37.5 | 35.51 |
| CDY72649 | Canola | nucleus | 30.6 | 35.5 |
| PGSC0003DMT400009031 | Potato | plastid | 37.07 | 34.82 |
| CDY24779 | Canola | nucleus | 31.9 | 34.74 |
| Bra011695.1-P | Field mustard | nucleus | 33.19 | 34.53 |
| CDY70754 | Canola | nucleus | 33.19 | 34.53 |
| CDY68627 | Canola | nucleus | 32.76 | 34.23 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 35.34 | 34.17 |
| CDY60289 | Canola | nucleus | 29.74 | 34.16 |
| Solyc02g085190.1.1 | Tomato | plastid | 37.07 | 34.13 |
| CDX69237 | Canola | nucleus | 32.33 | 33.63 |
| CDX72587 | Canola | cytosol | 32.76 | 33.48 |
| KRH08269 | Soybean | nucleus | 36.21 | 33.47 |
| CDX77958 | Canola | nucleus | 38.36 | 33.46 |
| KRH69915 | Soybean | nucleus | 35.78 | 32.94 |
| CDY51221 | Canola | nucleus | 28.45 | 32.84 |
| CDY69687 | Canola | nucleus | 26.72 | 32.8 |
| Bra017766.1-P | Field mustard | nucleus | 26.72 | 32.8 |
| CDY45238 | Canola | nucleus | 33.19 | 32.63 |
| Bra012080.1-P | Field mustard | nucleus | 33.19 | 32.63 |
| CDY30768 | Canola | nucleus | 31.9 | 32.46 |
| AT2G18380.1 | Thale cress | cytosol | 28.88 | 32.21 |
| Bra036854.1-P | Field mustard | nucleus | 39.22 | 31.49 |
| CDY28986 | Canola | cytosol | 37.07 | 31.39 |
| AT3G50870.1 | Thale cress | cytosol | 39.22 | 30.85 |
| CDX73777 | Canola | nucleus | 38.36 | 30.69 |
| PGSC0003DMT400040074 | Potato | nucleus | 32.76 | 30.65 |
| Bra012883.1-P | Field mustard | nucleus | 36.64 | 30.58 |
| CDX90680 | Canola | nucleus | 36.64 | 30.58 |
| GSMUA_Achr11P... | Banana | plastid | 14.66 | 28.81 |
| Solyc02g062760.2.1 | Tomato | nucleus | 31.03 | 28.35 |
| KRH43324 | Soybean | nucleus | 16.38 | 27.94 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 14.22 | 26.61 |
| Bra037221.1-P | Field mustard | nucleus | 26.72 | 26.16 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 13.36 | 24.6 |
| GSMUA_Achr7P09030_001 | Banana | nucleus | 15.95 | 23.72 |
| GSMUA_Achr10P... | Banana | mitochondrion | 18.97 | 22.0 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 13.36 | 21.83 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 13.79 | 21.48 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 12.93 | 21.13 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 18.53 | 19.72 |
| GSMUA_Achr2P16730_001 | Banana | nucleus | 17.67 | 19.71 |
| GSMUA_Achr2P15750_001 | Banana | plastid | 9.05 | 15.79 |
| GSMUA_Achr4P30820_001 | Banana | nucleus | 17.24 | 14.76 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr6G27250_001 | EnsemblPlants:GSMUA_Achr6P27250_001 |
| EnsemblPlants:GSMUA_Achr6T27250_001 | InterPro:IPR000679 | InterPro:IPR013088 | UniProt:M0TAM0 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0002965DED |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : | : |
Description
Putative GATA transcription factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr6G27250_001]
Coordinates
chr6:-:27814354..27815189
Molecular Weight (calculated)
25015.0 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.573
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHQCGHQSS TQQCSCGLLC GGAASFSIFF PASGSKFTDD DAFDGSKSDA SSSVDCTLSL GTPSTRLTEH KTLPSPTAHI QPPSCMSSFR WDSLSHPKKH
101: ASMGTARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAASPS SSTSVVTAAA EQTIGYGYIR QQQPQQSPWG CYAPTATKSG PSISVHDDTA
201: DEGDVPYLSW RLNLVPPTQF PVRDRPSLFQ YN
101: ASMGTARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAASPS SSTSVVTAAA EQTIGYGYIR QQQPQQSPWG CYAPTATKSG PSISVHDDTA
201: DEGDVPYLSW RLNLVPPTQF PVRDRPSLFQ YN
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.