Factsheet for Bra010563.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24779	Canola	nucleus	98.12	98.12
AT4G36620.1	Thale cress	cytosol	82.63	83.41
Bra017766.1-P	Field mustard	nucleus	69.95	78.84
Bra011695.1-P	Field mustard	nucleus	80.75	77.13
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.27	53.28
PGSC0003DMT400009031	Potato	plastid	47.42	40.89
Bra012883.1-P	Field mustard	nucleus	53.05	40.65
Bra036854.1-P	Field mustard	nucleus	53.99	39.79
Solyc02g085190.1.1	Tomato	plastid	46.95	39.68
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	42.25	37.5
Bra012080.1-P	Field mustard	nucleus	38.5	34.75
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	35.68	32.76
Bra037221.1-P	Field mustard	nucleus	36.15	32.49
PGSC0003DMT400040074	Potato	nucleus	37.56	32.26
Bra009926.1-P	Field mustard	cytosol	11.74	31.65
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	30.05	31.53
Solyc02g062760.2.1	Tomato	nucleus	37.09	31.1
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	32.39	30.8
GSMUA_Achr7P25620_001	Banana	nucleus	33.33	30.47
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	32.86	30.43
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	32.86	30.17
Zm00001d043969_P001	Maize	endoplasmic reticulum	32.86	30.04
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	32.86	29.91
Os05t0567900-00	Rice	cytosol, extracellular, plastid	34.27	29.2
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	28.64	28.91
EES19963	Sorghum	mitochondrion, nucleus, vacuole	30.99	28.82
KXG33047	Sorghum	extracellular	32.39	28.28
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	31.92	28.1
KRH43324	Soybean	nucleus	17.37	27.21
Bra036600.1-P	Field mustard	nucleus	13.15	27.18
Bra037421.1-P	Field mustard	nucleus	14.08	23.62
Bra020650.1-P	Field mustard	nucleus	15.02	22.86
Bra040288.1-P	Field mustard	nucleus	13.62	20.86
Bra022184.1-P	Field mustard	nucleus	14.55	18.67
Bra021209.1-P	Field mustard	nucleus	13.15	16.37
Bra033533.1-P	Field mustard	nucleus	13.62	16.2
Bra012742.1-P	Field mustard	nucleus	12.68	16.17
Bra035633.1-P	Field mustard	nucleus	20.19	14.29
Bra006851.1-P	Field mustard	nucleus, plastid	21.6	11.98
Bra019118.1-P	Field mustard	nucleus	20.66	11.34
Bra002788.1-P	Field mustard	nucleus	19.72	10.85
Bra026461.1-P	Field mustard	nucleus	17.84	10.56
Bra001644.1-P	Field mustard	nucleus	7.04	10.27

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra010563	EnsemblPlants:Bra010563.1	EnsemblPlants:Bra010563.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:M4D263	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000254600B	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

AT4G36620 (E=9e-077) | zinc finger (GATA type) family protein

Coordinates

chrA08:-:15195524..15196339

Molecular Weight (calculated)

23425.7 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.771

Length

213 amino acids

Sequence
(BLAST)

001: MGFSMFFSSE NDVVHHSTPY ASVDCTLSLG TPSTRLCNDD DRRFSSHTSN RLGWDFLHGA KKGSGGGGDN SYLLPRRCAN CDATSTPLWR NGPRGPKSLC
101: NACGIRFKKE ERRASTAGIS TSGGGSTAAG VSTSDHHGGA NYYYNNNHYA SPSPWIHHQQ HNTQRVPYYS PGNNQYSFVD DAREVNHDAT ADPFLSWRLN
201: VADRTSLVHD FTM

Best Arabidopsis Sequence Match ( AT4G36620.1 )
(BLAST)

001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M

Arabidopsis Description

GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.