Factsheet for Bra012742.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90545	Canola	nucleus	86.23	97.96
CDY09717	Canola	nucleus	93.41	88.14
Bra033533.1-P	Field mustard	nucleus	79.64	74.3
Bra022184.1-P	Field mustard	nucleus	65.27	65.66
Bra021209.1-P	Field mustard	nucleus	67.07	65.5
Bra037421.1-P	Field mustard	nucleus	37.72	49.61
Bra020650.1-P	Field mustard	nucleus	39.52	47.14
Bra001644.1-P	Field mustard	nucleus	39.52	45.21
Bra036600.1-P	Field mustard	nucleus	25.75	41.75
Bra009926.1-P	Field mustard	cytosol	19.16	40.51
GSMUA_Achr3P00700_001	Banana	nucleus	29.94	40.32
Bra040288.1-P	Field mustard	nucleus	33.53	40.29
GSMUA_Achr8P33850_001	Banana	nucleus	35.33	39.6
PGSC0003DMT400011779	Potato	nucleus	38.32	38.1
Solyc12g099370.1.1	Tomato	nucleus	38.32	38.1
GSMUA_Achr1P26550_001	Banana	nucleus	30.54	35.92
TraesCS5D01G508800.1	Wheat	nucleus	34.73	35.8
Os01t0976800-01	Rice	nucleus	29.94	35.21
GSMUA_Achr1P14780_001	Banana	nucleus	26.35	34.92
HORVU5Hr1G116310.1	Barley	nucleus	33.53	34.57
EER93149	Sorghum	nucleus	32.34	34.39
TraesCS5B01G508800.1	Wheat	nucleus	34.13	34.13
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	28.74	33.8
Solyc05g054400.2.1	Tomato	nucleus	39.52	33.5
Zm00001d034751_P001	Maize	nucleus	32.34	33.13
PGSC0003DMT400060241	Potato	nucleus	38.92	32.99
Zm00001d037605_P001	Maize	nucleus	26.95	31.47
Os01t0343300-01	Rice	nucleus	24.55	31.3
KXG32453	Sorghum	nucleus	23.35	31.2
TraesCS3A01G538400.1	Wheat	nucleus	31.14	30.95
HORVU6Hr1G093630.3	Barley	mitochondrion	23.95	29.85
TraesCS4A01G364700.1	Wheat	nucleus	32.34	29.83
Zm00001d011771_P001	Maize	nucleus	34.73	29.74
EES04307	Sorghum	nucleus	38.32	29.49
TraesCS1B01G126600.1	Wheat	cytosol	25.75	29.45
TraesCS3D01G544000.1	Wheat	nucleus	31.14	29.05
TraesCS3B01G603900.1	Wheat	nucleus	31.14	28.89
Zm00001d009193_P001	Maize	plastid	23.95	28.78
TraesCS1D01G106100.1	Wheat	cytosol	25.15	28.77
KXG21349	Sorghum	cytosol	25.75	27.56
TraesCS1A01G097300.1	Wheat	cytosol	25.75	27.04
Zm00001d040775_P001	Maize	nucleus	23.35	26.53
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	26.95	23.32
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.77	20.44
HORVU1Hr1G022710.3	Barley	plastid	25.15	19.44
Bra035633.1-P	Field mustard	nucleus	25.15	13.95
Bra017766.1-P	Field mustard	nucleus	14.97	13.23
Bra026461.1-P	Field mustard	nucleus	28.14	13.06
Bra010563.1-P	Field mustard	cytosol	16.17	12.68
Bra037221.1-P	Field mustard	nucleus	17.96	12.66
Bra011695.1-P	Field mustard	nucleus	16.77	12.56
Bra019118.1-P	Field mustard	nucleus	26.95	11.6
Bra012080.1-P	Field mustard	nucleus	16.17	11.44
Bra012883.1-P	Field mustard	nucleus	18.56	11.15
Bra002788.1-P	Field mustard	nucleus	25.75	11.11
Bra036854.1-P	Field mustard	nucleus	19.16	11.07
Bra006851.1-P	Field mustard	nucleus, plastid	25.15	10.94

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra012742	EnsemblPlants:Bra012742.1	EnsemblPlants:Bra012742.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4D8D2	PFAM:PF00320	PFscan:PS50114
PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000254089F	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

AT4G16141 (E=1e-031) | sequence-specific DNA binding / transcription factor/ zinc ion binding

Coordinates

chrA03:-:22491921..22492634

Molecular Weight (calculated)

17999.5 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.847

Length

167 amino acids

Sequence
(BLAST)

001: MSMTEETKTT KLESAGETSD VENGNCSSSG SGGDTKKTCV DCGTSKTPLW RGGPAGPKSL CNAGGIKSRK KRQAAHGIKQ EDNNNKIKKN KSSNDLALDD
101: QTVKSKMKTG TEDCNNSKKS VKGASRFLDF GFKVPVMKRS VVEKKRLWMK MGEEERAAVL LMALSCG

Best Arabidopsis Sequence Match ( AT4G16141.1 )
(BLAST)

001: MSMTEETKTT KLESAGDSSD VDNGNCSSSG SGGDTKKTCV DCGTSRTPLW RGGPAGPKSL CNACGIKSRK KRQAALGIRQ DDIKIKSKSN NNLGLESRNV
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q8GW81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.