Factsheet for Bra020650.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33918	Canola	nucleus	96.43	95.74
Bra037421.1-P	Field mustard	nucleus	73.57	81.1
AT5G49300.1	Thale cress	cytosol	76.43	76.98
Bra040288.1-P	Field mustard	nucleus	58.57	58.99
VIT_05s0077g01450.t01	Wine grape	nucleus	60.71	55.56
KRH02314	Soybean	nucleus	50.71	50.71
GSMUA_Achr3P00700_001	Banana	nucleus	44.29	50.0
Bra036600.1-P	Field mustard	nucleus	33.57	45.63
Bra009926.1-P	Field mustard	cytosol	25.0	44.3
KRH50773	Soybean	nucleus	49.29	43.67
GSMUA_Achr8P33850_001	Banana	nucleus	45.71	42.95
GSMUA_Achr1P14780_001	Banana	nucleus	38.57	42.86
Bra022184.1-P	Field mustard	nucleus	50.71	42.77
GSMUA_Achr1P26550_001	Banana	nucleus	42.86	42.25
Solyc12g099370.1.1	Tomato	nucleus	47.86	39.88
PGSC0003DMT400011779	Potato	nucleus	47.86	39.88
Bra012742.1-P	Field mustard	nucleus	47.14	39.52
Bra021209.1-P	Field mustard	nucleus	47.86	39.18
Os01t0976800-01	Rice	nucleus	39.29	38.73
Bra033533.1-P	Field mustard	nucleus	47.86	37.43
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	37.86	37.32
EER93149	Sorghum	nucleus	41.43	36.94
Zm00001d034751_P001	Maize	nucleus	40.71	34.97
PGSC0003DMT400060241	Potato	nucleus	47.86	34.01
Solyc05g054400.2.1	Tomato	nucleus	47.86	34.01
HORVU5Hr1G116310.1	Barley	nucleus	39.29	33.95
TraesCS5D01G508800.1	Wheat	nucleus	38.57	33.33
TraesCS3A01G538400.1	Wheat	nucleus	39.29	32.74
TraesCS5B01G508800.1	Wheat	nucleus	38.57	32.34
Zm00001d037605_P001	Maize	nucleus	31.43	30.77
TraesCS3D01G544000.1	Wheat	nucleus	38.57	30.17
KXG32453	Sorghum	nucleus	26.43	29.6
TraesCS3B01G603900.1	Wheat	nucleus	37.86	29.44
Zm00001d011771_P001	Maize	nucleus	40.71	29.23
HORVU6Hr1G093630.3	Barley	mitochondrion	27.86	29.1
Bra001644.1-P	Field mustard	nucleus	30.0	28.77
EES04307	Sorghum	nucleus	44.29	28.57
TraesCS4A01G364700.1	Wheat	nucleus	35.71	27.62
Os01t0343300-01	Rice	nucleus	25.71	27.48
Zm00001d009193_P001	Maize	plastid	27.14	27.34
KXG21349	Sorghum	cytosol	30.0	26.92
TraesCS1B01G126600.1	Wheat	cytosol	27.86	26.71
TraesCS1D01G106100.1	Wheat	cytosol	27.14	26.03
Zm00001d040775_P001	Maize	nucleus	26.43	25.17
TraesCS1A01G097300.1	Wheat	cytosol	27.14	23.9
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	30.71	22.28
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.71	21.17
HORVU1Hr1G022710.3	Barley	plastid	27.14	17.59
Bra035633.1-P	Field mustard	nucleus	33.57	15.61
Bra010563.1-P	Field mustard	cytosol	22.86	15.02
Bra017766.1-P	Field mustard	nucleus	20.0	14.81
Bra012080.1-P	Field mustard	nucleus	24.29	14.41
Bra011695.1-P	Field mustard	nucleus	22.14	13.9
Bra026461.1-P	Field mustard	nucleus	33.57	13.06
Bra036854.1-P	Field mustard	nucleus	26.43	12.8
Bra012883.1-P	Field mustard	nucleus	25.0	12.59
Bra019118.1-P	Field mustard	nucleus	34.29	12.37
Bra006851.1-P	Field mustard	nucleus, plastid	33.57	12.24
Bra037221.1-P	Field mustard	nucleus	20.71	12.24
Bra002788.1-P	Field mustard	nucleus	33.57	12.14

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra020650	EnsemblPlants:Bra020650.1	EnsemblPlants:Bra020650.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4DVV6	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002546510
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:	:	:

Description

AT5G49300 (E=3e-051) | zinc finger (GATA type) family protein

Coordinates

chrA02:-:23944785..23945362

Molecular Weight (calculated)

15484.6 Da

IEP (calculated)

10.092

GRAVY (calculated)

-1.045

Length

140 amino acids

Sequence
(BLAST)

001: MLDHSEEEYS ETMKRRAEDA IEQNRTCSND KKACADCGTS KTPLWRGGPA GPKSLCNACG IRNRKRRRGV EDKKQPKKTN SGGGGGDLKR SPKVGESMKQ
101: RMMDLGMTKR STVEKQLRKL GEEEQAAVLL MALSYGSVYA

Best Arabidopsis Sequence Match ( AT5G49300.1 )
(BLAST)

001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA

Arabidopsis Description

GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.