Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68462 | Soybean | cytosol | 35.92 | 63.75 |
| Solyc09g075610.2.1 | Tomato | plastid | 33.1 | 52.81 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 30.28 | 51.81 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 41.55 | 47.58 |
| PGSC0003DMT400081417 | Potato | nucleus | 33.8 | 45.28 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 38.73 | 44.35 |
| CDY25008 | Canola | nucleus | 30.28 | 43.0 |
| CDX87024 | Canola | nucleus | 30.99 | 42.72 |
| CDX86241 | Canola | nucleus | 38.03 | 42.52 |
| CDX85400 | Canola | nucleus | 38.03 | 42.52 |
| Bra037421.1-P | Field mustard | nucleus | 38.03 | 42.52 |
| Zm00001d011771_P001 | Maize | nucleus | 57.04 | 41.54 |
| KRH02314 | Soybean | nucleus | 40.85 | 41.43 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 42.96 | 40.94 |
| Bra009926.1-P | Field mustard | cytosol | 22.54 | 40.51 |
| CDY05639 | Canola | nucleus | 37.32 | 40.46 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 42.96 | 39.87 |
| Bra036600.1-P | Field mustard | nucleus | 28.87 | 39.81 |
| EES04307 | Sorghum | nucleus | 60.56 | 39.63 |
| Bra020650.1-P | Field mustard | nucleus | 38.73 | 39.29 |
| CDY33918 | Canola | nucleus | 38.73 | 39.01 |
| AT5G49300.1 | Thale cress | cytosol | 38.03 | 38.85 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 38.73 | 38.73 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 33.1 | 37.3 |
| PGSC0003DMT400063771 | Potato | nucleus | 39.44 | 37.09 |
| Solyc01g100220.2.1 | Tomato | nucleus | 38.73 | 36.91 |
| AT3G06740.1 | Thale cress | nucleus | 38.73 | 36.91 |
| KRH50773 | Soybean | nucleus | 40.85 | 36.71 |
| AT5G26930.1 | Thale cress | cytosol | 30.99 | 36.67 |
| PGSC0003DMT400011779 | Potato | nucleus | 42.96 | 36.31 |
| Solyc12g099370.1.1 | Tomato | nucleus | 42.96 | 36.31 |
| Bra040288.1-P | Field mustard | nucleus | 35.21 | 35.97 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 35.92 | 35.92 |
| CDY34933 | Canola | nucleus | 35.21 | 35.71 |
| Os01t0343300-01 | Rice | nucleus | 31.69 | 34.35 |
| CDX90545 | Canola | nucleus | 35.21 | 34.01 |
| CDY34429 | Canola | cytosol | 35.21 | 32.68 |
| CDY68751 | Canola | cytosol, mitochondrion | 22.54 | 31.68 |
| CDX92103 | Canola | nucleus | 35.92 | 30.72 |
| CDX95897 | Canola | nucleus | 35.21 | 30.49 |
| CDY34981 | Canola | nucleus | 36.62 | 30.41 |
| Bra021209.1-P | Field mustard | nucleus | 36.62 | 30.41 |
| Bra022184.1-P | Field mustard | nucleus | 35.21 | 30.12 |
| Solyc05g054400.2.1 | Tomato | nucleus | 41.55 | 29.95 |
| PGSC0003DMT400060241 | Potato | nucleus | 41.55 | 29.95 |
| Bra012742.1-P | Field mustard | nucleus | 35.21 | 29.94 |
| CDY52723 | Canola | nucleus | 37.32 | 29.44 |
| CDY09717 | Canola | nucleus | 36.62 | 29.38 |
| Bra033533.1-P | Field mustard | nucleus | 36.62 | 29.05 |
| CDX82388 | Canola | nucleus | 35.21 | 28.74 |
| CDX80603 | Canola | nucleus | 29.58 | 28.57 |
| CDY32214 | Canola | nucleus | 35.92 | 28.49 |
| CDX75893 | Canola | nucleus | 35.92 | 27.87 |
| AT3G16870.1 | Thale cress | nucleus | 35.92 | 26.84 |
| AT4G16141.1 | Thale cress | cytosol | 35.92 | 25.89 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 34.51 | 25.39 |
| Os02t0220400-01 | Rice | nucleus | 37.32 | 15.01 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 23.94 | 14.05 |
| Os06t0571800-02 | Rice | nucleus | 32.39 | 13.26 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 23.24 | 13.2 |
| Os05t0578900-01 | Rice | nucleus | 23.94 | 12.19 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:4327810 | EMBL:AK241643 | ProteinID:BAD87039.1 | ProteinID:BAF07484.2 |
| ProteinID:BAS76477.1 | ProteinID:EEE56108.1 | GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | EnsemblPlantsGene:Os01g0976800 | EnsemblPlants:Os01t0976800-01 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF279 | UniProt:Q5JNB8 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI00004C285E |
| RefSeq:XP_015641177.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : |
Description
GATA TRANSCRIPTION FACTOR 10Zinc finger, NHR/GATA-type domain containing protein. (Os01t0976800-01)
Coordinates
chr1:-:43172242..43173072
Molecular Weight (calculated)
15565.6 Da
IEP (calculated)
9.881
GRAVY (calculated)
-0.767
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA LGLDSSATAT ATDGAEQQKK TKAKKEKAQE EEVTMELHTV
101: GFRSKDAAVF KQRRRMRRRK CLGEEERAAI LLMALSSGVI YA
101: GFRSKDAAVF KQRRRMRRRK CLGEEERAAI LLMALSSGVI YA
001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
Arabidopsis Description
GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.