Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87024 | Canola | nucleus | 84.0 | 81.55 |
| AT5G26930.1 | Thale cress | cytosol | 75.0 | 62.5 |
| CDY68751 | Canola | cytosol, mitochondrion | 61.0 | 60.4 |
| CDX80603 | Canola | nucleus | 77.0 | 52.38 |
| CDX85400 | Canola | nucleus | 46.0 | 36.22 |
| CDY05639 | Canola | nucleus | 47.0 | 35.88 |
| CDX86241 | Canola | nucleus | 45.0 | 35.43 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 42.0 | 33.87 |
| CDY34933 | Canola | nucleus | 47.0 | 33.57 |
| CDY33918 | Canola | nucleus | 47.0 | 33.33 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 48.0 | 32.21 |
| KXG32453 | Sorghum | nucleus | 39.0 | 31.2 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 44.0 | 30.99 |
| Os01t0976800-01 | Rice | nucleus | 43.0 | 30.28 |
| Zm00001d009193_P001 | Maize | plastid | 42.0 | 30.22 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 38.0 | 30.16 |
| Os01t0343300-01 | Rice | nucleus | 39.0 | 29.77 |
| Zm00001d037605_P001 | Maize | nucleus | 42.0 | 29.37 |
| CDX95897 | Canola | nucleus | 48.0 | 29.27 |
| CDX92103 | Canola | nucleus | 48.0 | 28.92 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 41.0 | 28.87 |
| Solyc01g100220.2.1 | Tomato | nucleus | 43.0 | 28.86 |
| PGSC0003DMT400063771 | Potato | nucleus | 43.0 | 28.48 |
| Zm00001d040775_P001 | Maize | nucleus | 41.0 | 27.89 |
| CDX90545 | Canola | nucleus | 40.0 | 27.21 |
| CDX82388 | Canola | nucleus | 47.0 | 27.01 |
| CDY34981 | Canola | nucleus | 46.0 | 26.9 |
| CDY34429 | Canola | cytosol | 41.0 | 26.8 |
| EER93149 | Sorghum | nucleus | 42.0 | 26.75 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 39.0 | 26.71 |
| KXG21349 | Sorghum | cytosol | 41.0 | 26.28 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 38.0 | 26.03 |
| Zm00001d034751_P001 | Maize | nucleus | 42.0 | 25.77 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 43.0 | 25.6 |
| CDY52723 | Canola | nucleus | 46.0 | 25.56 |
| CDX75893 | Canola | nucleus | 46.0 | 25.14 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 40.0 | 24.69 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 40.0 | 24.69 |
| CDY09717 | Canola | nucleus | 43.0 | 24.29 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 43.0 | 24.02 |
| CDY32214 | Canola | nucleus | 43.0 | 24.02 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 40.0 | 23.95 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 38.0 | 23.9 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 43.0 | 23.89 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 42.0 | 21.76 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 39.0 | 21.55 |
| Zm00001d011771_P001 | Maize | nucleus | 42.0 | 21.54 |
| EES04307 | Sorghum | nucleus | 44.0 | 20.28 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 26.0 | 19.4 |
| HORVU1Hr1G022710.3 | Barley | plastid | 38.0 | 17.59 |
| CDY53079 | Canola | cytosol | 30.0 | 14.49 |
| CDY69687 | Canola | nucleus | 26.0 | 13.76 |
| CDY13040 | Canola | cytosol | 27.0 | 13.57 |
| CDY72649 | Canola | nucleus | 27.0 | 13.5 |
| CDY60289 | Canola | nucleus | 27.0 | 13.37 |
| CDY30768 | Canola | nucleus | 30.0 | 13.16 |
| CDY24779 | Canola | nucleus | 28.0 | 13.15 |
| CDY45238 | Canola | nucleus | 31.0 | 13.14 |
| CDX72587 | Canola | cytosol | 29.0 | 12.78 |
| CDX69237 | Canola | nucleus | 28.0 | 12.56 |
| CDY70754 | Canola | nucleus | 28.0 | 12.56 |
| CDY51221 | Canola | nucleus | 25.0 | 12.44 |
| CDY68627 | Canola | nucleus | 27.0 | 12.16 |
| CDX77958 | Canola | nucleus | 30.0 | 11.28 |
| CDX88593 | Canola | nucleus | 39.0 | 10.99 |
| CDY28986 | Canola | cytosol | 30.0 | 10.95 |
| CDX89358 | Canola | nucleus | 39.0 | 10.83 |
| CDX94365 | Canola | nucleus | 39.0 | 10.83 |
| CDX90680 | Canola | nucleus | 30.0 | 10.79 |
| CDY32755 | Canola | nucleus | 41.0 | 10.59 |
| CDY32891 | Canola | nucleus | 41.0 | 10.57 |
| CDY42752 | Canola | nucleus | 39.0 | 10.54 |
| CDY42753 | Canola | nucleus | 39.0 | 10.54 |
| CDY67979 | Canola | nucleus | 41.0 | 10.46 |
| CDY20709 | Canola | nucleus | 41.0 | 10.41 |
| CDX73777 | Canola | nucleus | 30.0 | 10.34 |
| CDY67546 | Canola | nucleus | 38.0 | 10.11 |
| CDY65439 | Canola | nucleus | 38.0 | 9.9 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078GK77 | UniProt:A0A078GK77 | EnsemblPlants:CDY25008 | ProteinID:CDY25008 |
| ProteinID:CDY25008.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00028827001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EC4FDA | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC02g40000DBnaC02g40000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK77]
Coordinates
chrLK032167:+:247932..248438
Molecular Weight (calculated)
11410.2 Da
IEP (calculated)
10.620
GRAVY (calculated)
-0.500
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEEKKRVRC CSDCRTTKTP MWRGGPSGPK SLCNACGIRF MRQRRSEFLG IHRHKAYKKK INTSILSSKF CVSLKKRKSL KEEEQAALCL LLLSCSSVLA
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.