Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51221 | Canola | nucleus | 96.04 | 96.52 |
| CDY13040 | Canola | cytosol | 82.18 | 83.42 |
| CDY72649 | Canola | nucleus | 81.68 | 82.5 |
| AT2G18380.1 | Thale cress | cytosol | 81.68 | 79.33 |
| Bra037221.1-P | Field mustard | nucleus | 82.67 | 70.46 |
| CDY69687 | Canola | nucleus | 45.05 | 48.15 |
| CDY53079 | Canola | cytosol | 45.54 | 44.44 |
| CDX69237 | Canola | nucleus | 49.01 | 44.39 |
| CDY68627 | Canola | nucleus | 48.51 | 44.14 |
| CDY24779 | Canola | nucleus | 46.53 | 44.13 |
| CDY70754 | Canola | nucleus | 48.51 | 43.95 |
| CDX72587 | Canola | cytosol | 47.52 | 42.29 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 43.56 | 36.67 |
| PGSC0003DMT400040074 | Potato | nucleus | 41.09 | 33.47 |
| CDX77958 | Canola | nucleus | 44.06 | 33.46 |
| Solyc02g085190.1.1 | Tomato | plastid | 41.58 | 33.33 |
| CDY28986 | Canola | cytosol | 45.05 | 33.21 |
| Solyc02g062760.2.1 | Tomato | nucleus | 41.58 | 33.07 |
| PGSC0003DMT400009031 | Potato | plastid | 40.1 | 32.79 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 33.66 | 32.23 |
| CDX73777 | Canola | nucleus | 46.04 | 32.07 |
| CDX90680 | Canola | nucleus | 44.06 | 32.01 |
| CDY30768 | Canola | nucleus | 34.65 | 30.7 |
| CDY45238 | Canola | nucleus | 35.15 | 30.08 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 34.65 | 30.04 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 34.16 | 29.74 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 33.66 | 29.57 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 29.7 | 29.56 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 32.67 | 29.46 |
| KRH43324 | Soybean | nucleus | 19.8 | 29.41 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 33.66 | 29.31 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 33.66 | 29.06 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 33.17 | 28.76 |
| CDY68751 | Canola | cytosol, mitochondrion | 13.86 | 27.72 |
| KXG33047 | Sorghum | extracellular | 33.17 | 27.46 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 32.67 | 27.27 |
| CDX87024 | Canola | nucleus | 13.86 | 27.18 |
| CDY25008 | Canola | nucleus | 13.37 | 27.0 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 30.2 | 26.64 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 32.18 | 26.0 |
| CDX85400 | Canola | nucleus | 15.35 | 24.41 |
| CDX86241 | Canola | nucleus | 15.35 | 24.41 |
| CDY05639 | Canola | nucleus | 14.85 | 22.9 |
| CDY33918 | Canola | nucleus | 15.35 | 21.99 |
| CDY34933 | Canola | nucleus | 14.85 | 21.43 |
| CDX95897 | Canola | nucleus | 17.33 | 21.34 |
| CDX92103 | Canola | nucleus | 17.33 | 21.08 |
| CDY34429 | Canola | cytosol | 15.84 | 20.91 |
| CDX90545 | Canola | nucleus | 14.36 | 19.73 |
| CDY34981 | Canola | nucleus | 15.84 | 18.71 |
| CDX75893 | Canola | nucleus | 16.83 | 18.58 |
| CDX82388 | Canola | nucleus | 15.84 | 18.39 |
| CDY52723 | Canola | nucleus | 16.34 | 18.33 |
| CDY09717 | Canola | nucleus | 15.84 | 18.08 |
| CDY32214 | Canola | nucleus | 15.84 | 17.88 |
| CDX80603 | Canola | nucleus | 12.87 | 17.69 |
| CDY42753 | Canola | nucleus | 21.78 | 11.89 |
| CDY42752 | Canola | nucleus | 21.78 | 11.89 |
| CDX88593 | Canola | nucleus | 20.79 | 11.83 |
| CDY67546 | Canola | nucleus | 21.29 | 11.44 |
| CDY32755 | Canola | nucleus | 21.78 | 11.37 |
| CDY32891 | Canola | nucleus | 21.78 | 11.34 |
| CDY65439 | Canola | nucleus | 20.79 | 10.94 |
| CDY20709 | Canola | nucleus | 21.29 | 10.91 |
| CDY67979 | Canola | nucleus | 20.79 | 10.71 |
| CDX94365 | Canola | nucleus | 17.33 | 9.72 |
| CDX89358 | Canola | nucleus | 16.83 | 9.44 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078J6I9 | UniProt:A0A078J6I9 | EnsemblPlants:CDY60289 | ProteinID:CDY60289 |
| ProteinID:CDY60289.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00028419001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EEFFA9 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaA09g52870DBnaA09g52870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6I9]
Coordinates
chrLK033863:-:24774..25848
Molecular Weight (calculated)
22317.3 Da
IEP (calculated)
7.051
GRAVY (calculated)
-0.822
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGYQTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDEHH RFSSANSNNI SGDFFFHGGS AKTTTSYKKS GSEHNLPRRC ASCDTTSTPL
101: WRNGPKGPKS LCNACGIRFK KEERRAAARN SITSGGGSSV AEVPAENLYN GGGNYYTHHH YASSSPSWAH QNTQRVQYFS PAPEMEYPFV DDVTAASFLS
201: WN
101: WRNGPKGPKS LCNACGIRFK KEERRAAARN SITSGGGSSV AEVPAENLYN GGGNYYTHHH YASSSPSWAH QNTQRVQYFS PAPEMEYPFV DDVTAASFLS
201: WN
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.