Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 58.08 | 65.52 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 63.32 | 58.0 |
| KXG33047 | Sorghum | extracellular | 55.02 | 51.64 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 44.1 | 43.35 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 40.61 | 40.09 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 34.93 | 37.91 |
| KRH30068 | Soybean | plastid | 24.02 | 35.26 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 19.65 | 32.85 |
| AT4G36620.1 | Thale cress | cytosol | 28.82 | 31.28 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 32.75 | 31.25 |
| KRH28681 | Soybean | nucleus | 33.19 | 31.02 |
| Bra010563.1-P | Field mustard | cytosol | 28.82 | 30.99 |
| CDY53079 | Canola | cytosol | 27.95 | 30.92 |
| CDY13040 | Canola | cytosol | 26.64 | 30.65 |
| CDY24779 | Canola | nucleus | 28.38 | 30.52 |
| CDY72649 | Canola | nucleus | 26.64 | 30.5 |
| CDY60289 | Canola | nucleus | 26.64 | 30.2 |
| EES20002 | Sorghum | plastid | 38.86 | 30.07 |
| CDY51221 | Canola | nucleus | 25.76 | 29.35 |
| PGSC0003DMT400009031 | Potato | plastid | 31.44 | 29.15 |
| Bra011695.1-P | Field mustard | nucleus | 28.38 | 29.15 |
| CDY70754 | Canola | nucleus | 28.38 | 29.15 |
| CDY69687 | Canola | nucleus | 24.02 | 29.1 |
| Bra017766.1-P | Field mustard | nucleus | 24.02 | 29.1 |
| KRH08269 | Soybean | nucleus | 31.88 | 29.08 |
| CDX72587 | Canola | cytosol | 28.82 | 29.07 |
| CDY68627 | Canola | nucleus | 27.95 | 28.83 |
| CDX77958 | Canola | nucleus | 33.19 | 28.57 |
| KRH69915 | Soybean | nucleus | 31.44 | 28.57 |
| Solyc02g085190.1.1 | Tomato | plastid | 31.44 | 28.57 |
| CDX69237 | Canola | nucleus | 27.51 | 28.25 |
| AT2G18380.1 | Thale cress | cytosol | 24.89 | 27.4 |
| Bra036854.1-P | Field mustard | nucleus | 33.19 | 26.3 |
| CDY28986 | Canola | cytosol | 31.44 | 26.28 |
| Bra012080.1-P | Field mustard | nucleus | 27.07 | 26.27 |
| CDY45238 | Canola | nucleus | 27.07 | 26.27 |
| CDX73777 | Canola | nucleus | 33.19 | 26.21 |
| CDY30768 | Canola | nucleus | 25.76 | 25.88 |
| CDX90680 | Canola | nucleus | 31.0 | 25.54 |
| Bra012883.1-P | Field mustard | nucleus | 31.0 | 25.54 |
| AT3G50870.1 | Thale cress | cytosol | 32.75 | 25.42 |
| PGSC0003DMT400040074 | Potato | nucleus | 27.07 | 25.0 |
| Solyc02g062760.2.1 | Tomato | nucleus | 27.51 | 24.8 |
| KXG32453 | Sorghum | nucleus | 13.54 | 24.8 |
| Bra037221.1-P | Field mustard | nucleus | 24.45 | 23.63 |
| KRH43324 | Soybean | nucleus | 13.97 | 23.53 |
| KXG21349 | Sorghum | cytosol | 13.97 | 20.51 |
| EER93149 | Sorghum | nucleus | 13.1 | 19.11 |
| EES04307 | Sorghum | nucleus | 15.28 | 16.13 |
| KXG29816 | Sorghum | nucleus | 19.65 | 11.63 |
| EER88552 | Sorghum | nucleus | 17.9 | 10.62 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:8063620 | UniProt:C5YVX7 | EnsemblPlants:EES19963 | ProteinID:EES19963 |
| ProteinID:EES19963.1 | GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF292 | SMART:SM00401 |
| EnsemblPlantsGene:SORBI_3009G236000 | SUPFAM:SSF57716 | UniParc:UPI0001A892D3 | RefSeq:XP_002441533.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:57477811..57480989
Molecular Weight (calculated)
24107.4 Da
IEP (calculated)
7.497
GRAVY (calculated)
-0.345
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQQEVPPCA CGPRYAGGCG GRCAASAPAF SLLFPMPMAL PPEQCYYYHA EDGGPVDCTL SLATPSTRRA EAAGVVHARA GGGGGGAAVL VEEPLQQQQE
101: GSPPRRCANC DTASTPLWRN GPRGPKSLCN ACGIRYKKEE RRAAAAVAPA PATQDSGGWL YACGGYARPP QQQQQQQWGC YGKSVASYGM YGGDGVVDAD
201: GPCLSWMLNV VPSSPAFAVP ERHTLFQYY
101: GSPPRRCANC DTASTPLWRN GPRGPKSLCN ACGIRYKKEE RRAAAAVAPA PATQDSGGWL YACGGYARPP QQQQQQQWGC YGKSVASYGM YGGDGVVDAD
201: GPCLSWMLNV VPSSPAFAVP ERHTLFQYY
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.