CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28681	Soybean	nucleus	87.18	55.51
KRH08269	Soybean	nucleus	69.87	43.43
KRH69915	Soybean	nucleus	66.67	41.27
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	62.82	40.83
PGSC0003DMT400009031	Potato	plastid	60.9	38.46
Solyc02g085190.1.1	Tomato	plastid	61.54	38.1
KRH43324	Soybean	nucleus	28.21	32.35
KRH68462	Soybean	cytosol	15.38	30.0
KRG96744	Soybean	cytosol, mitochondrion, nucleus	15.38	28.92
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	41.03	27.59
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	38.46	26.79
GSMUA_Achr7P25620_001	Banana	nucleus	39.74	26.61
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	39.1	26.52
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	41.03	26.45
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	39.1	26.29
KXG33047	Sorghum	extracellular	41.03	26.23
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	33.97	26.11
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	39.1	26.07
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	35.26	26.07
Zm00001d043969_P001	Maize	endoplasmic reticulum	38.46	25.75
Os05t0567900-00	Rice	cytosol, extracellular, plastid	39.1	24.4
EES19963	Sorghum	mitochondrion, nucleus, vacuole	35.26	24.02
KRH02314	Soybean	nucleus	19.23	21.43
KRH50773	Soybean	nucleus	19.23	18.99
KRH19153	Soybean	nucleus	26.92	13.38
KRH02716	Soybean	nucleus	25.64	12.42
KRH15535	Soybean	nucleus	24.36	12.42
KRH61505	Soybean	nucleus	22.44	11.99
KRH05458	Soybean	nucleus	23.08	11.76
KRH12382	Soybean	nucleus	23.72	11.75
KRH37384	Soybean	nucleus	23.08	10.68

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02006869	EnsemblPlantsGene:GLYMA_11G156200	GO:GO:0000977	GO:GO:0001085
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:K7LQQ6	EnsemblPlants:KRH30068	ProteinID:KRH30068
ProteinID:KRH30068.1	PFAM:PF00320	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401
SUPFAM:SSF57716	UniParc:UPI000296A0F9	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:13555158..13555851

Molecular Weight (calculated)

17613.6 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.733

Length

156 amino acids

Sequence
(BLAST)

001: MTLITPSSSS SVDCTLSLGT PSTRFSKYEE KRSCHERRSV SNFCWDLLQS KHNNPQSHSK SSQITNTTDP VLVHRCANCD TTYNPLWRNG PHGPKSLCNA
101: CGIRFKKEER RASAATAKMQ CFSPRMGNEF RFMDDADRVT ADNGISFLSW RLNVTD

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.