CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02716	nucleus, nucleus
KRH12382	nucleus, nucleus
KRH19153	nucleus, nucleus
KRH37384	nucleus, nucleus
KRH43324	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	KRH43324	AT3G50870.1	23335616
AT3G50870.1	KRH43324	AT3G50870.1	23335616
AT3G50870.1	KRH02716	AT4G26150.1	23335616
AT3G50870.1	KRH12382	AT4G26150.1	23335616
AT3G50870.1	KRH19153	AT4G26150.1	23335616
AT3G50870.1	KRH37384	AT4G26150.1	23335616
AT3G50870.1	KRH02716	AT4G26150.1	23335616
AT3G50870.1	KRH12382	AT4G26150.1	23335616
AT3G50870.1	KRH19153	AT4G26150.1	23335616
AT3G50870.1	KRH37384	AT4G26150.1	23335616
AT3G50870.1	KRH43324	AT4G36620.1	23335616
AT3G50870.1	KRH43324	AT4G36620.1	23335616
AT3G50870.1	KRH02716	AT5G56860.1	23335616
AT3G50870.1	KRH12382	AT5G56860.1	23335616
AT3G50870.1	KRH19153	AT5G56860.1	23335616
AT3G50870.1	KRH37384	AT5G56860.1	23335616
AT3G50870.1	KRH02716	AT5G56860.1	23335616
AT3G50870.1	KRH12382	AT5G56860.1	23335616
AT3G50870.1	KRH19153	AT5G56860.1	23335616
AT3G50870.1	KRH37384	AT5G56860.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30068	Soybean	plastid	32.35	28.21
KRH28681	Soybean	nucleus	42.65	23.67
Bra017766.1-P	Field mustard	nucleus	29.41	21.16
CDY69687	Canola	nucleus	29.41	21.16
KRH08269	Soybean	nucleus	38.24	20.72
CDY72649	Canola	nucleus	30.15	20.5
AT2G18380.1	Thale cress	cytosol	30.88	20.19
KRH68462	Soybean	cytosol	11.76	20.0
KRH69915	Soybean	nucleus	36.76	19.84
CDY60289	Canola	nucleus	29.41	19.8
CDY30768	Canola	nucleus	33.09	19.74
CDY13040	Canola	cytosol	28.68	19.6
CDY51221	Canola	nucleus	28.68	19.4
KRG96744	Soybean	cytosol, mitochondrion, nucleus	11.76	19.28
AT4G36620.1	Thale cress	cytosol	29.41	18.96
CDY45238	Canola	nucleus	32.35	18.64
Bra012080.1-P	Field mustard	nucleus	32.35	18.64
CDY53079	Canola	cytosol	27.94	18.36
CDY28986	Canola	cytosol	36.76	18.25
Bra036854.1-P	Field mustard	nucleus	38.24	17.99
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	26.47	17.73
Bra012883.1-P	Field mustard	nucleus	36.03	17.63
CDX90680	Canola	nucleus	36.03	17.63
CDX72587	Canola	cytosol	29.41	17.62
CDY70754	Canola	nucleus	28.68	17.49
CDY24779	Canola	nucleus	27.21	17.37
Bra010563.1-P	Field mustard	cytosol	27.21	17.37
Bra037221.1-P	Field mustard	nucleus	30.15	17.3
CDX73777	Canola	nucleus	36.76	17.24
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	26.47	17.06
Bra011695.1-P	Field mustard	nucleus	27.94	17.04
CDX77958	Canola	nucleus	33.09	16.92
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.91	16.79
GSMUA_Achr7P25620_001	Banana	nucleus	28.68	16.74
CDY68627	Canola	nucleus	27.21	16.67
CDX69237	Canola	nucleus	27.21	16.59
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	27.94	16.38
AT3G50870.1	Thale cress	cytosol	35.29	16.27
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	25.0	15.18
Zm00001d043969_P001	Maize	endoplasmic reticulum	25.74	15.02
Os05t0567900-00	Rice	cytosol, extracellular, plastid	27.21	14.8
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	25.0	14.78
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	25.0	14.66
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	25.0	14.53
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	25.74	14.46
KXG33047	Sorghum	extracellular	25.74	14.34
EES19963	Sorghum	mitochondrion, nucleus, vacuole	23.53	13.97
KRH02314	Soybean	nucleus	13.97	13.57
KRH50773	Soybean	nucleus	13.97	12.03
KRH61505	Soybean	nucleus	20.59	9.59
KRH19153	Soybean	nucleus	18.38	7.96
KRH12382	Soybean	nucleus	18.38	7.94
KRH15535	Soybean	nucleus	17.65	7.84
KRH02716	Soybean	nucleus	18.38	7.76
KRH37384	Soybean	nucleus	19.12	7.72
KRH05458	Soybean	nucleus	16.18	7.19

Protein Annotations

EntrezGene:102662596	Gene3D:3.30.50.10	MapMan:35.2	EMBL:ACUP02004851	EnsemblPlantsGene:GLYMA_08G142500	GO:GO:0000977
GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:K7L6N5	EnsemblPlants:KRH43324
ProteinID:KRH43324	ProteinID:KRH43324.1	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	UniParc:UPI000296F7EA
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:10848026..10849211

Molecular Weight (calculated)

15462.7 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.740

Length

136 amino acids

Sequence
(BLAST)

001: MWYVSQPNHQ LLRHVFLHAQ PQTTTLHDSD NIYDYSSFTP SSFSSVDCNL SLGTPSTCVS EDEEKRSRHE CHSVSNFCWD LLQSKHNNPQ SHSKSSGTTN
101: TTDPLLARRC ANCDTTSTPL WRNAPVALRY VNNYNI

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.