Factsheet for Bra037221.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60289	Canola	nucleus	70.46	82.67
CDY51221	Canola	nucleus	67.51	79.6
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.4	66.42
AT2G18380.1	Thale cress	cytosol	56.96	64.9
Bra017766.1-P	Field mustard	nucleus	32.91	41.27
Bra009926.1-P	Field mustard	cytosol	12.24	36.71
Bra010563.1-P	Field mustard	cytosol	32.49	36.15
Bra011695.1-P	Field mustard	nucleus	33.33	35.43
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	32.07	31.67
Solyc02g085190.1.1	Tomato	plastid	32.49	30.56
Solyc02g062760.2.1	Tomato	nucleus	32.49	30.32
PGSC0003DMT400040074	Potato	nucleus	31.65	30.24
KRH43324	Soybean	nucleus	17.3	30.15
PGSC0003DMT400009031	Potato	plastid	31.22	29.96
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	26.58	29.86
Bra036600.1-P	Field mustard	nucleus	12.24	28.16
Bra036854.1-P	Field mustard	nucleus	34.18	28.03
Bra012080.1-P	Field mustard	nucleus	27.85	27.97
Bra012883.1-P	Field mustard	nucleus	32.49	27.7
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	26.16	27.68
GSMUA_Achr7P25620_001	Banana	nucleus	27.0	27.47
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	26.58	27.39
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	26.58	27.16
Zm00001d043969_P001	Maize	endoplasmic reticulum	26.58	27.04
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	26.58	26.92
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	26.16	26.72
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	22.78	26.6
KXG33047	Sorghum	extracellular	26.58	25.82
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	26.16	25.62
EES19963	Sorghum	mitochondrion, nucleus, vacuole	23.63	24.45
Os05t0567900-00	Rice	cytosol, extracellular, plastid	25.32	24.0
Bra037421.1-P	Field mustard	nucleus	12.66	23.62
Bra040288.1-P	Field mustard	nucleus	13.08	22.3
Bra022184.1-P	Field mustard	nucleus	14.77	21.08
Bra020650.1-P	Field mustard	nucleus	12.24	20.71
Bra021209.1-P	Field mustard	nucleus	14.35	19.88
Bra012742.1-P	Field mustard	nucleus	12.66	17.96
Bra033533.1-P	Field mustard	nucleus	13.5	17.88
Bra035633.1-P	Field mustard	nucleus	16.46	12.96
Bra002788.1-P	Field mustard	nucleus	17.72	10.85
Bra006851.1-P	Field mustard	nucleus, plastid	17.3	10.68
Bra019118.1-P	Field mustard	nucleus	17.3	10.57
Bra026461.1-P	Field mustard	nucleus	13.92	9.17
Bra001644.1-P	Field mustard	nucleus	5.06	8.22

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra037221	EnsemblPlants:Bra037221.1	EnsemblPlants:Bra037221.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4F810	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002541EDA
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT2G18380 (E=2e-071) | transcription factor

Coordinates

chrA09:-:4934168..4935732

Molecular Weight (calculated)

26400.6 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.727

Length

237 amino acids

Sequence
(BLAST)

001: MMGYKTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDEHH RFSSANSNNI SGDFFFHGGS PKTTTSYKKS GSEHNLPRRC ASCDTTSTPL
101: WRNGPKGPKS LCNACGIRFK KEERRAAARN SITSGGGSSV AEVPAENLYN GGGNYYTHHH YASSIRDVKQ VYPSRSVLYR GGLVIERVTA NLFRADCGLQ
201: NAGPNLYHGI YRPSRETPPY QTVCYIFFHE CSNRRVV

Best Arabidopsis Sequence Match ( AT2G18380.1 )
(BLAST)

001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN

Arabidopsis Description

GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.