Factsheet for VIT_04s0023g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g01840.t01	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	VIT_04s0023g01840.t01	AT3G50870.1	23335616
AT3G50870.1	VIT_04s0023g01840.t01	AT3G50870.1	23335616
AT3G50870.1	VIT_04s0023g01840.t01	AT4G36620.1	23335616
AT3G50870.1	VIT_04s0023g01840.t01	AT4G36620.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30068	Soybean	plastid	40.83	62.82
KRH28681	Soybean	nucleus	60.0	58.78
KRH08269	Soybean	nucleus	57.5	54.98
KRH69915	Soybean	nucleus	55.83	53.17
Solyc02g062760.2.1	Tomato	nucleus	53.75	50.79
PGSC0003DMT400040074	Potato	nucleus	51.25	49.6
CDY13040	Canola	cytosol	38.75	46.73
CDY72649	Canola	nucleus	38.75	46.5
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	25.83	45.26
CDY69687	Canola	nucleus	35.42	44.97
Bra017766.1-P	Field mustard	nucleus	35.42	44.97
CDY53079	Canola	cytosol	37.92	43.96
AT2G18380.1	Thale cress	cytosol	37.92	43.75
CDY60289	Canola	nucleus	36.67	43.56
CDY51221	Canola	nucleus	35.42	42.29
CDY24779	Canola	nucleus	37.5	42.25
Bra010563.1-P	Field mustard	cytosol	37.5	42.25
AT4G36620.1	Thale cress	cytosol	37.08	42.18
CDY70754	Canola	nucleus	38.75	41.7
Bra011695.1-P	Field mustard	nucleus	38.33	41.26
CDY68627	Canola	nucleus	37.92	40.99
CDX69237	Canola	nucleus	37.92	40.81
CDX72587	Canola	cytosol	38.33	40.53
CDX77958	Canola	nucleus	44.58	40.23
CDX73777	Canola	nucleus	48.33	40.0
Bra036854.1-P	Field mustard	nucleus	47.5	39.45
CDY28986	Canola	cytosol	45.0	39.42
AT3G50870.1	Thale cress	cytosol	47.5	38.64
CDX90680	Canola	nucleus	43.75	37.77
Bra012883.1-P	Field mustard	nucleus	43.75	37.77
CDY30768	Canola	nucleus	35.0	36.84
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	34.17	36.61
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	30.83	36.45
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	34.58	36.09
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	34.58	35.78
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	35.83	35.54
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	34.58	35.47
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	34.17	35.34
Zm00001d043969_P001	Maize	endoplasmic reticulum	33.75	34.76
CDY45238	Canola	nucleus	34.17	34.75
Bra012080.1-P	Field mustard	nucleus	34.17	34.75
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	30.42	34.6
KXG33047	Sorghum	extracellular	34.58	34.02
GSMUA_Achr7P25620_001	Banana	nucleus	32.5	33.48
EES19963	Sorghum	mitochondrion, nucleus, vacuole	31.25	32.75
Bra037221.1-P	Field mustard	nucleus	31.67	32.07
Os05t0567900-00	Rice	cytosol, extracellular, plastid	32.08	30.8
VIT_14s0060g01520.t01	Wine grape	nucleus	12.08	23.39
VIT_05s0077g01450.t01	Wine grape	nucleus	13.33	20.91
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	22.08	17.15
VIT_04s0008g01290.t01	Wine grape	plastid	20.0	15.69

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CCB44447	ProteinID:CCB44447.1	UniProt:F6GWW1	EMBL:FN594959
GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	PFAM:PF00320
ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716
UniParc:UPI0002109A19	ArrayExpress:VIT_04s0023g01840	EnsemblPlantsGene:VIT_04s0023g01840	EnsemblPlants:VIT_04s0023g01840.t01	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18421723..18423027

Molecular Weight (calculated)

26789.4 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.464

Length

240 amino acids

Sequence
(BLAST)

001: MAGPCTCGLF HNQSNSFSML FSMPNHKPFD ETDMYPFTSS SSSSVDCTLS LGTPSTRLTD NDEKRMHHDR RAGSCVSNFC WDILHSGSSS NNSAGDPLLA
101: RRCANCDTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAT AAAATTGATA GVMEPQHIMI SHHNNSWVHH SQTQKMPCLS PAMGNEFRFI EDDDRDSDTG
201: IPFLSWPFEL EFTLPGLKLL ALFIFLNYIT EQRSQHISFW

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.