Factsheet for VIT_11s0016g02210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	30.74	47.5
VIT_04s0008g01290.t01	Wine grape	plastid	46.93	47.39
GSMUA_Achr2P15750_001	Banana	plastid	20.39	47.37
VIT_14s0060g01520.t01	Wine grape	nucleus	16.5	41.13
GSMUA_Achr4P30820_001	Banana	nucleus	33.33	38.01
VIT_05s0077g01450.t01	Wine grape	nucleus	18.12	36.6
TraesCS6A01G185900.1	Wheat	cytosol	34.63	31.29
TraesCS6D01G173000.1	Wheat	cytosol	34.63	31.29
TraesCS6B01G214900.1	Wheat	cytosol	33.66	30.41
TraesCS7A01G363100.1	Wheat	nucleus	34.63	30.06
Os02t0220400-01	Rice	nucleus	34.3	30.03
HORVU7Hr1G086810.1	Barley	nucleus	34.95	30.0
HORVU6Hr1G039720.2	Barley	cytosol	33.33	29.94
TraesCS7D01G359900.1	Wheat	nucleus	34.63	29.8
Zm00001d046354_P001	Maize	nucleus	34.95	29.19
TraesCS7B01G264800.1	Wheat	nucleus	33.98	29.09
EER88552	Sorghum	nucleus	35.92	28.76
Zm00001d016361_P001	Maize	nucleus	33.66	28.11
Os06t0571800-02	Rice	nucleus	31.07	27.67
KXG29816	Sorghum	nucleus	33.33	26.61
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	17.15	22.08
Bra001644.1-P	Field mustard	nucleus	9.71	20.55

Protein Annotations

EntrezGene:100261004	wikigene:100261004	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CBI27913	ProteinID:CBI27913.3
UniProt:D7TB78	EMBL:FN595756	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	EntrezGene:LOC100261004	wikigene:LOC100261004	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114
PANTHER:PTHR10071	PANTHER:PTHR10071:SF191	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00019841C3	ArrayExpress:VIT_11s0016g02210
EnsemblPlantsGene:VIT_11s0016g02210	EnsemblPlants:VIT_11s0016g02210.t01	unigene:Vvi.20119	RefSeq:XP_002282173	RefSeq:XP_002282173.1	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1817794..1819359

Molecular Weight (calculated)

34200.4 Da

IEP (calculated)

9.610

GRAVY (calculated)

-0.765

Length

309 amino acids

Sequence
(BLAST)

001: MTPNYLNSPP PPPFPLQLNE DQHHQLLFSP KPQPSSSSSS SLTCPIFFSP TKEQGGCHYR DLHQAQPQQE AHDKFVFRGG SYDHPTLESE SDNGLKLTIW
101: KTEDRNENHS ENGSVKWMSS KMRVMQKMMI SDQTGAQKPS NTALNFGDHK QQSLPSETDY NSINSSNINS NNTIRVCADC NTTKTPLWRS GPRGPKSLCN
201: ACGIRQRKAR RAMAAAAATA NGTILPTNTA PTKTKAKHKD KKSSNGHVSH YKKRCKLAAA PSCETKKLCF EDFTISLSKN SAFHRVFLQD EIKEAAILLM
301: ALSCGLVHG

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.