Factsheet for VIT_04s0008g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	47.39	46.93
GSMUA_Achr10P...	Banana	mitochondrion	30.07	46.0
GSMUA_Achr2P15750_001	Banana	plastid	19.28	44.36
VIT_14s0060g01520.t01	Wine grape	nucleus	15.69	38.71
Solyc07g038160.2.1	Tomato	nucleus	32.68	37.59
KRH61505	Soybean	nucleus	35.29	36.99
KRH15535	Soybean	nucleus	36.6	36.6
Solyc12g008830.1.1	Tomato	nucleus	34.64	36.18
PGSC0003DMT400000761	Potato	nucleus	33.66	35.89
GSMUA_Achr4P30820_001	Banana	nucleus	31.7	35.79
PGSC0003DMT400011449	Potato	nucleus	33.01	35.31
KRH05458	Soybean	nucleus	34.97	34.97
VIT_05s0077g01450.t01	Wine grape	nucleus	16.99	33.99
TraesCS6D01G173000.1	Wheat	cytosol	35.62	31.87
TraesCS6A01G185900.1	Wheat	cytosol	35.62	31.87
TraesCS7A01G363100.1	Wheat	nucleus	36.27	31.18
TraesCS7D01G359900.1	Wheat	nucleus	36.27	30.92
HORVU7Hr1G086810.1	Barley	nucleus	36.27	30.83
TraesCS6B01G214900.1	Wheat	cytosol	34.31	30.7
TraesCS7B01G264800.1	Wheat	nucleus	35.95	30.47
Os02t0220400-01	Rice	nucleus	34.64	30.03
HORVU6Hr1G039720.2	Barley	cytosol	33.66	29.94
Zm00001d046354_P001	Maize	nucleus	34.64	28.65
Os06t0571800-02	Rice	nucleus	32.03	28.24
Zm00001d016361_P001	Maize	nucleus	33.33	27.57
EER88552	Sorghum	nucleus	34.64	27.46
KXG29816	Sorghum	nucleus	32.03	25.32
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	15.69	20.0
Bra001644.1-P	Field mustard	nucleus	9.15	19.18

Protein Annotations

EntrezGene:100247474	wikigene:100247474	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:AM444649	ProteinID:CAN63090
ProteinID:CAN63090.1	ProteinID:CBI20665	ProteinID:CBI20665.3	UniProt:D7STR6	EMBL:FN595231	GO:GO:0000977
GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	EntrezGene:LOC100247474	wikigene:LOC100247474
PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF226	SMART:SM00401
SUPFAM:SSF57716	TIGR:TC56643	UniParc:UPI0001982EEE	ArrayExpress:VIT_04s0008g01290	EnsemblPlantsGene:VIT_04s0008g01290	EnsemblPlants:VIT_04s0008g01290.t01
unigene:Vvi.1486	RefSeq:XP_002279283	RefSeq:XP_002279283.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

No Description!

Coordinates

chr4:+:1062821..1064192

Molecular Weight (calculated)

34093.2 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.823

Length

306 amino acids

Sequence
(BLAST)

001: MTPVFLNTSS SSPFPALELK EDHQHFQLLF STNPPSYQAS SSHPCPSFFN SSTQSQRGDH SPRDPQQHED KDDKYISHGG CGESQVFSSS SLLQPMADDN
101: KSSHKLSVFK KEEGDEGNKS TEKWMSSKMR LMRKMMNSDC TTAKIEQKVE DHQQWDNINE FNSSNNTSNI PIRVCSDCNT TKTPLWRSGP RGPKSLCNAC
201: GIRQRKARRA MAAAAAAAAN GTAVGTEISP MKMKLPNKEK KMHTSNVGQQ KKLCKPPCPP PTEKKLCFED FTSSICKNSG FRRVFPRDEE EAAILLMALS
301: CDLVYS

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.