Factsheet for TraesCS6A01G185900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G173000.1	Wheat	cytosol	97.37	97.37
TraesCS6B01G214900.1	Wheat	cytosol	92.69	92.69
HORVU6Hr1G039720.2	Barley	cytosol	88.01	87.5
Os02t0220400-01	Rice	nucleus	67.25	65.16
GSMUA_Achr7P09030_001	Banana	nucleus	24.27	53.21
Zm00001d016361_P001	Maize	nucleus	57.02	52.7
KXG29816	Sorghum	nucleus	58.77	51.94
TraesCS7A01G363100.1	Wheat	nucleus	52.34	50.28
GSMUA_Achr2P16730_001	Banana	nucleus	25.73	42.31
VIT_04s0008g01290.t01	Wine grape	plastid	31.87	35.62
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	31.29	34.63
KRH02716	Soybean	nucleus	28.95	30.75
Solyc07g038160.2.1	Tomato	nucleus	23.39	30.08
KRH19153	Soybean	nucleus	27.19	29.62
Bra035633.1-P	Field mustard	nucleus	26.02	29.57
TraesCS3A01G538400.1	Wheat	nucleus	14.33	29.17
PGSC0003DMT400011449	Potato	nucleus	23.68	28.32
PGSC0003DMT400000761	Potato	nucleus	23.1	27.53
AT4G26150.1	Thale cress	cytosol	27.49	26.7
KRH61505	Soybean	nucleus	22.51	26.37
Solyc12g008830.1.1	Tomato	nucleus	22.51	26.28
Bra026461.1-P	Field mustard	nucleus	27.49	26.11
CDX89358	Canola	nucleus	27.19	25.83
KRH12382	Soybean	nucleus	23.68	25.71
CDX94365	Canola	nucleus	26.9	25.56
KRH15535	Soybean	nucleus	22.81	25.49
KRH05458	Soybean	nucleus	22.51	25.16
CDY20709	Canola	nucleus	28.66	24.87
CDY42753	Canola	nucleus	26.9	24.86
CDY42752	Canola	nucleus	26.9	24.86
CDY67979	Canola	nucleus	28.07	24.49
CDY32755	Canola	nucleus	27.49	24.29
Bra002788.1-P	Field mustard	nucleus	27.49	24.29
CDY32891	Canola	nucleus	27.19	23.97
CDY67546	Canola	nucleus	26.32	23.94
TraesCS1A01G097300.1	Wheat	cytosol	11.11	23.9
TraesCS4A01G364700.1	Wheat	nucleus	12.57	23.76
KRH37384	Soybean	nucleus	23.39	23.74
CDX88593	Canola	nucleus	24.56	23.66
Bra019118.1-P	Field mustard	nucleus	26.61	23.45
AT5G56860.1	Thale cress	nucleus	26.9	23.12
Bra006851.1-P	Field mustard	nucleus, plastid	25.44	22.66
CDY65439	Canola	nucleus	25.44	22.66
Bra001644.1-P	Field mustard	nucleus	9.36	21.92
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	14.62	21.37
TraesCS1A01G418200.1	Wheat	plastid	12.87	20.09

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009646	GO:GO:0009658
GO:GO:0009719	GO:GO:0009735	GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0016043	GO:GO:0043565	GO:GO:0099402	GO:GO:1901698	InterPro:IPR000679
InterPro:IPR013088	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF287
SMART:SM00401	SUPFAM:SSF57716	EnsemblPlantsGene:TraesCS6A01G185900	EnsemblPlants:TraesCS6A01G185900.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
TIGR:cd00202	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:219561275..219562597

Molecular Weight (calculated)

36878.6 Da

IEP (calculated)

8.583

GRAVY (calculated)

-0.535

Length

342 amino acids

Sequence
(BLAST)

001: MSTIYMSQLS TLPLMDGDQD QGHFQAFHLP KGPPILFPFM IDNPVEHQGQ AYGDQHSRQQ FFGESNQQFN DHMMMSGGSA DVFATCSPFG PTIQSIGSDM
101: IQRSSYNSYD FEATHAGDGS TSQWASAKPP VKMRIMRKAP TNDHQGGTAR KPRRRAQAHQ GDESQQLQHP MGVIRVCSDC NTTKTPLWRS GPCGPKSLCN
201: ACGIRQRKAR RAMAAAAATA ATNGGVASAS SGGVAEGATQ ASDASQAVKA TKKEKRAVDL DRSLPFKKRC KMVDHPTVTS TKAVAVDATP KDQDHVVAED
301: GAMVERLSKA DPQAAFTHGF MRDEITDAAM LLMTLSCGLV RS

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.