Factsheet for Bra006851.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56860.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88593	Canola	nucleus	91.67	99.15
CDY65439	Canola	nucleus	96.88	96.88
Bra002788.1-P	Field mustard	nucleus	80.21	79.59
Bra035633.1-P	Field mustard	nucleus	60.42	77.08
AT5G56860.1	Thale cress	nucleus	79.17	76.38
Bra026461.1-P	Field mustard	nucleus	45.83	48.89
Bra019118.1-P	Field mustard	nucleus	48.44	47.94
Bra009926.1-P	Field mustard	cytosol	8.59	41.77
Bra036600.1-P	Field mustard	nucleus	10.16	37.86
Bra037421.1-P	Field mustard	nucleus	12.5	37.8
KRH19153	Soybean	nucleus	30.73	37.58
KRH02716	Soybean	nucleus	30.47	36.34
Bra040288.1-P	Field mustard	nucleus	12.5	34.53
KRH12382	Soybean	nucleus	28.12	34.29
GSMUA_Achr8P24880_001	Banana	nucleus	19.27	33.95
Bra020650.1-P	Field mustard	nucleus	12.24	33.57
KRH37384	Soybean	nucleus	27.08	30.86
Bra022184.1-P	Field mustard	nucleus	12.76	29.52
Bra021209.1-P	Field mustard	nucleus	12.5	28.07
TraesCS7A01G363100.1	Wheat	nucleus	25.52	27.53
TraesCS7D01G359900.1	Wheat	nucleus	25.52	27.3
HORVU7Hr1G086810.1	Barley	nucleus	25.26	26.94
Bra033533.1-P	Field mustard	nucleus	12.5	26.82
TraesCS7B01G264800.1	Wheat	nucleus	24.74	26.32
Zm00001d016361_P001	Maize	nucleus	25.0	25.95
Zm00001d046354_P001	Maize	nucleus	25.0	25.95
EER88552	Sorghum	nucleus	25.78	25.65
TraesCS6A01G185900.1	Wheat	cytosol	22.66	25.44
Bra012742.1-P	Field mustard	nucleus	10.94	25.15
TraesCS6D01G173000.1	Wheat	cytosol	22.4	25.15
Os02t0220400-01	Rice	nucleus	22.92	24.93
HORVU6Hr1G039720.2	Barley	cytosol	22.14	24.71
TraesCS6B01G214900.1	Wheat	cytosol	21.88	24.56
Os06t0571800-02	Rice	nucleus	22.14	24.5
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	8.59	24.09
KXG29816	Sorghum	nucleus	24.22	24.03
Bra017766.1-P	Field mustard	nucleus	11.46	23.28
Bra011695.1-P	Field mustard	nucleus	12.76	21.97
Bra001644.1-P	Field mustard	nucleus	8.33	21.92
Bra010563.1-P	Field mustard	cytosol	11.98	21.6
Bra012883.1-P	Field mustard	nucleus	14.32	19.78
Bra036854.1-P	Field mustard	nucleus	13.8	18.34
Bra012080.1-P	Field mustard	nucleus	10.68	17.37
Bra037221.1-P	Field mustard	nucleus	10.68	17.3

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra006851	EnsemblPlants:Bra006851.1	EnsemblPlants:Bra006851.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4CRL0	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF191	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000253FD1B
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT5G56860 (E=2e-127) GNC | GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor

Coordinates

chrA03:+:5352632..5354366

Molecular Weight (calculated)

43287.7 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.923

Length

384 amino acids

Sequence
(BLAST)

001: MGSNFHYSID LNENQNHHEQ PFFYPLGSSS SLLHNQVLSN SSCSSSSISS LSSYLPFLIN SQEDQHVEYK NTYHVDHVHL SQPLKAKMFN SGSSSSYDHM
101: VPKKETRLKL TIRKKDHHED QTDFLHQNQT KPNLDSDKWM MSPKMRLIKN TITNNKQSTD HTSKNNNDHK EDHHLLNQKI SLEEDHDEDL KKISPRTTTA
201: VTRENRDNTI NENGYGNNNG LIRVCSNCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARQA AMAAATAEGD QEVMAARMQQ LPVKKKLQNK KKRSNGGDKY
301: DITPHVGAYT KKCKIKEGDE YAAAVAKISK STTSSDSSVS SNKLRFDDLT IMLTKSSAYQ QVFPQDEKEA AVLLMALSYG MVHG

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.