Factsheet for Bra033533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32214	Canola	nucleus	98.88	98.88
Bra012742.1-P	Field mustard	nucleus	74.3	79.64
AT4G16141.1	Thale cress	cytosol	78.21	71.07
Bra021209.1-P	Field mustard	nucleus	60.34	63.16
Bra022184.1-P	Field mustard	nucleus	58.1	62.65
Bra037421.1-P	Field mustard	nucleus	34.64	48.82
Bra020650.1-P	Field mustard	nucleus	37.43	47.86
Bra036600.1-P	Field mustard	nucleus	26.26	45.63
Bra009926.1-P	Field mustard	cytosol	19.55	44.3
Bra040288.1-P	Field mustard	nucleus	33.52	43.17
Bra001644.1-P	Field mustard	nucleus	35.2	43.15
GSMUA_Achr3P00700_001	Banana	nucleus	28.49	41.13
PGSC0003DMT400011779	Potato	nucleus	37.99	40.48
Solyc12g099370.1.1	Tomato	nucleus	37.99	40.48
GSMUA_Achr8P33850_001	Banana	nucleus	32.4	38.93
Os01t0976800-01	Rice	nucleus	29.05	36.62
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	29.05	36.62
GSMUA_Achr1P14780_001	Banana	nucleus	25.7	36.51
HORVU5Hr1G116310.1	Barley	nucleus	32.96	36.42
EER93149	Sorghum	nucleus	31.84	36.31
KXG32453	Sorghum	nucleus	25.14	36.0
GSMUA_Achr1P26550_001	Banana	nucleus	27.93	35.21
Os01t0343300-01	Rice	nucleus	25.7	35.11
Zm00001d034751_P001	Maize	nucleus	31.84	34.97
TraesCS5D01G508800.1	Wheat	nucleus	31.28	34.57
PGSC0003DMT400060241	Potato	nucleus	37.99	34.52
Zm00001d037605_P001	Maize	nucleus	27.37	34.27
TraesCS5B01G508800.1	Wheat	nucleus	31.84	34.13
Solyc05g054400.2.1	Tomato	nucleus	37.43	34.01
TraesCS3A01G538400.1	Wheat	nucleus	30.73	32.74
Zm00001d009193_P001	Maize	plastid	25.14	32.37
HORVU6Hr1G093630.3	Barley	mitochondrion	23.46	31.34
TraesCS3D01G544000.1	Wheat	nucleus	30.73	30.73
TraesCS3B01G603900.1	Wheat	nucleus	30.73	30.56
KXG21349	Sorghum	cytosol	26.26	30.13
TraesCS4A01G364700.1	Wheat	nucleus	29.61	29.28
Zm00001d040775_P001	Maize	nucleus	24.02	29.25
TraesCS1B01G126600.1	Wheat	cytosol	23.46	28.77
TraesCS1D01G106100.1	Wheat	cytosol	23.46	28.77
EES04307	Sorghum	nucleus	34.08	28.11
Zm00001d011771_P001	Maize	nucleus	30.17	27.69
TraesCS1A01G097300.1	Wheat	cytosol	24.02	27.04
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	26.26	24.35
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.2	21.17
HORVU1Hr1G022710.3	Barley	plastid	24.02	19.91
Bra035633.1-P	Field mustard	nucleus	26.82	15.95
Bra017766.1-P	Field mustard	nucleus	15.08	14.29
Bra010563.1-P	Field mustard	cytosol	16.2	13.62
Bra026461.1-P	Field mustard	nucleus	27.37	13.61
Bra037221.1-P	Field mustard	nucleus	17.88	13.5
Bra011695.1-P	Field mustard	nucleus	16.76	13.45
Bra012080.1-P	Field mustard	nucleus	16.76	12.71
Bra006851.1-P	Field mustard	nucleus, plastid	26.82	12.5
Bra002788.1-P	Field mustard	nucleus	26.82	12.4
Bra019118.1-P	Field mustard	nucleus	26.26	12.11
Bra036854.1-P	Field mustard	nucleus	19.55	12.11
Bra012883.1-P	Field mustard	nucleus	17.32	11.15

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra033533	EnsemblPlants:Bra033533.1	EnsemblPlants:Bra033533.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4EXJ6	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00025448B8
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT3G16870 (E=3e-041) | zinc finger (GATA type) family protein

Coordinates

chrA01:+:11297797..11298615

Molecular Weight (calculated)

19642.5 Da

IEP (calculated)

10.617

GRAVY (calculated)

-0.887

Length

179 amino acids

Sequence
(BLAST)

001: MSMTEETKTT TKLETAGDSS DVESGNCSSS GSGGDTKKTC VDCGTNKTPL WRGGPAGPKS LCNACGIKSR KKRQAALGIR QDDNKKIKNK TNNSLPLDHQ
101: TIKNRKGESG NFKNKIKTTE SENFISRVNK KSLERASRFL DLGFKVPAMK RSVVEKKRLW RKLGEEERAA VLLMTLSCG

Best Arabidopsis Sequence Match ( AT4G16141.1 )
(BLAST)

001: MSMTEETKTT KLESAGDSSD VDNGNCSSSG SGGDTKKTCV DCGTSRTPLW RGGPAGPKSL CNACGIKSRK KRQAALGIRQ DDIKIKSKSN NNLGLESRNV
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q8GW81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.