Factsheet for Bra040288.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34933	Canola	nucleus	97.12	96.43
AT3G06740.1	Thale cress	nucleus	77.7	72.48
Bra037421.1-P	Field mustard	nucleus	53.96	59.06
Bra020650.1-P	Field mustard	nucleus	58.99	58.57
VIT_05s0077g01450.t01	Wine grape	nucleus	55.4	50.33
KRH02314	Soybean	nucleus	49.64	49.29
Bra009926.1-P	Field mustard	cytosol	25.9	45.57
Bra036600.1-P	Field mustard	nucleus	33.09	44.66
GSMUA_Achr3P00700_001	Banana	nucleus	39.57	44.35
KRH50773	Soybean	nucleus	48.92	43.04
PGSC0003DMT400011779	Potato	nucleus	46.04	38.1
Solyc12g099370.1.1	Tomato	nucleus	46.04	38.1
Bra022184.1-P	Field mustard	nucleus	43.88	36.75
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	37.41	36.62
GSMUA_Achr1P26550_001	Banana	nucleus	36.69	35.92
GSMUA_Achr1P14780_001	Banana	nucleus	32.37	35.71
PGSC0003DMT400060241	Potato	nucleus	50.36	35.53
Solyc05g054400.2.1	Tomato	nucleus	50.36	35.53
Os01t0976800-01	Rice	nucleus	35.97	35.21
Bra021209.1-P	Field mustard	nucleus	42.45	34.5
EER93149	Sorghum	nucleus	38.85	34.39
Bra012742.1-P	Field mustard	nucleus	40.29	33.53
Bra033533.1-P	Field mustard	nucleus	43.17	33.52
Zm00001d034751_P001	Maize	nucleus	38.13	32.52
GSMUA_Achr8P33850_001	Banana	nucleus	34.53	32.21
TraesCS5D01G508800.1	Wheat	nucleus	36.69	31.48
HORVU5Hr1G116310.1	Barley	nucleus	36.69	31.48
TraesCS5B01G508800.1	Wheat	nucleus	36.69	30.54
TraesCS3A01G538400.1	Wheat	nucleus	35.97	29.76
Os01t0343300-01	Rice	nucleus	27.34	29.01
KXG32453	Sorghum	nucleus	25.18	28.0
Zm00001d037605_P001	Maize	nucleus	28.78	27.97
TraesCS3B01G603900.1	Wheat	nucleus	35.97	27.78
Zm00001d011771_P001	Maize	nucleus	38.85	27.69
HORVU6Hr1G093630.3	Barley	mitochondrion	26.62	27.61
TraesCS3D01G544000.1	Wheat	nucleus	35.25	27.37
EES04307	Sorghum	nucleus	42.45	27.19
TraesCS1B01G126600.1	Wheat	cytosol	28.06	26.71
TraesCS4A01G364700.1	Wheat	nucleus	34.53	26.52
TraesCS1D01G106100.1	Wheat	cytosol	27.34	26.03
Zm00001d009193_P001	Maize	plastid	25.9	25.9
KXG21349	Sorghum	cytosol	28.06	25.0
Bra001644.1-P	Field mustard	nucleus	25.18	23.97
TraesCS1A01G097300.1	Wheat	cytosol	26.62	23.27
Zm00001d040775_P001	Maize	nucleus	24.46	23.13
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	29.5	21.24
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.42	19.71
HORVU1Hr1G022710.3	Barley	plastid	27.34	17.59
Bra035633.1-P	Field mustard	nucleus	34.53	15.95
Bra017766.1-P	Field mustard	nucleus	19.42	14.29
Bra010563.1-P	Field mustard	cytosol	20.86	13.62
Bra012080.1-P	Field mustard	nucleus	23.02	13.56
Bra037221.1-P	Field mustard	nucleus	22.3	13.08
Bra011695.1-P	Field mustard	nucleus	20.86	13.0
Bra026461.1-P	Field mustard	nucleus	33.09	12.78
Bra006851.1-P	Field mustard	nucleus, plastid	34.53	12.5
Bra002788.1-P	Field mustard	nucleus	34.53	12.4
Bra019118.1-P	Field mustard	nucleus	33.09	11.86
Bra012883.1-P	Field mustard	nucleus	23.02	11.51
Bra036854.1-P	Field mustard	nucleus	23.02	11.07

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra040288	EnsemblPlants:Bra040288.1	EnsemblPlants:Bra040288.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4FGR0	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002544B01
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT3G06740 (E=1e-043) | zinc finger (GATA type) family protein

Coordinates

chrA01:-:28081022..28081595

Molecular Weight (calculated)

15181.4 Da

IEP (calculated)

10.277

GRAVY (calculated)

-0.688

Length

139 amino acids

Sequence
(BLAST)

001: MLDHTEKIFD SEAMTTKFTS VDATEEINSS SDGGGGTINE KKSCAICGTS KTPLWRGGPT GPKSLCNACG IRNKKKKSTV RSEVKKKKKK QSSKIGDSLK
101: QRLMELGREV MMQRKKKLGE EEQAAVLLMA LSYASSVYA

Best Arabidopsis Sequence Match ( AT3G06740.1 )
(BLAST)

001: MLDPTEKVID SESMESKLTS VDAIEEHSSS SSNEAISNEK KSCAICGTSK TPLWRGGPAG PKSLCNACGI RNRKKRRTLI SNRSEDKKKK SHNRNPKFGD
101: SLKQRLMELG REVMMQRSTA ENQRRNKLGE EEQAAVLLMA LSYASSVYA

Arabidopsis Description

GATA15GATA transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.