Factsheet for Bra001644.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021209.1-P	Field mustard	nucleus	59.59	50.88
Bra022184.1-P	Field mustard	nucleus	51.37	45.18
Bra012742.1-P	Field mustard	nucleus	45.21	39.52
Bra033533.1-P	Field mustard	nucleus	43.15	35.2
Bra037421.1-P	Field mustard	nucleus	28.08	32.28
Bra020650.1-P	Field mustard	nucleus	28.77	30.0
Bra036600.1-P	Field mustard	nucleus	20.55	29.13
Bra040288.1-P	Field mustard	nucleus	23.97	25.18
Bra009926.1-P	Field mustard	cytosol	12.33	22.78
GSMUA_Achr2P15750_001	Banana	plastid	20.55	22.56
GSMUA_Achr10P...	Banana	mitochondrion	23.97	17.5
GSMUA_Achr4P30820_001	Banana	nucleus	23.29	12.55
Solyc07g038160.2.1	Tomato	nucleus	19.18	10.53
PGSC0003DMT400000761	Potato	nucleus	20.55	10.45
KRH61505	Soybean	nucleus	19.86	9.93
KRH05458	Soybean	nucleus	20.55	9.8
PGSC0003DMT400011449	Potato	nucleus	19.18	9.79
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	20.55	9.71
Solyc12g008830.1.1	Tomato	nucleus	19.18	9.56
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	8.9	9.49
KRH15535	Soybean	nucleus	19.86	9.48
TraesCS6A01G185900.1	Wheat	cytosol	21.92	9.36
Bra035633.1-P	Field mustard	nucleus	19.18	9.3
VIT_04s0008g01290.t01	Wine grape	plastid	19.18	9.15
TraesCS6D01G173000.1	Wheat	cytosol	21.23	9.06
HORVU6Hr1G039720.2	Barley	cytosol	20.55	8.72
Os02t0220400-01	Rice	nucleus	20.55	8.5
TraesCS6B01G214900.1	Wheat	cytosol	19.86	8.48
Zm00001d046354_P001	Maize	nucleus	21.23	8.38
Bra006851.1-P	Field mustard	nucleus, plastid	21.92	8.33
Bra026461.1-P	Field mustard	nucleus	20.55	8.33
TraesCS7A01G363100.1	Wheat	nucleus	19.86	8.15
Zm00001d016361_P001	Maize	nucleus	20.55	8.11
TraesCS7D01G359900.1	Wheat	nucleus	19.18	7.8
HORVU7Hr1G086810.1	Barley	nucleus	19.18	7.78
EER88552	Sorghum	nucleus	20.55	7.77
TraesCS7B01G264800.1	Wheat	nucleus	19.18	7.76
Bra002788.1-P	Field mustard	nucleus	20.55	7.75
Bra019118.1-P	Field mustard	nucleus	20.55	7.73
Bra010563.1-P	Field mustard	cytosol	10.27	7.04
KXG29816	Sorghum	nucleus	18.49	6.98
Bra011695.1-P	Field mustard	nucleus	10.27	6.73
Os06t0571800-02	Rice	nucleus	15.75	6.63
Bra036854.1-P	Field mustard	nucleus	10.27	5.19
Bra012080.1-P	Field mustard	nucleus	8.22	5.08
Bra037221.1-P	Field mustard	nucleus	8.22	5.06
Bra012883.1-P	Field mustard	nucleus	9.59	5.04
Bra017766.1-P	Field mustard	nucleus	6.16	4.76

Protein Annotations

EnsemblPlants:Bra001644.1	EnsemblPlants:Bra001644.1-P	EnsemblPlantsGene:Bra001644	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SEG:seg	UniParc:UPI0002540AD1	UniProt:M4CBR4
MapMan:35.1	:	:	:	:	:

Description

AT3G16870 (E=3e-016) | zinc finger (GATA type) family protein

Coordinates

chrA03:-:17670182..17670753

Molecular Weight (calculated)

16216.7 Da

IEP (calculated)

10.889

GRAVY (calculated)

-0.442

Length

146 amino acids

Sequence
(BLAST)

001: MSTTRTAVEA AAVEVVARRR GLALIAEHFE LLSGAVALLG LRKKRQAALG IKPEEKKIRR SNSSNSDLSI DHHRNDKNKI NKDYDHKTCS TSSRSSKRVS
101: KFLDLGLDVP VMKRSAVEKK RLWKKLGEEE RAAVLLMALS CGSVFS

Best Arabidopsis Sequence Match ( AT3G16870.1 )
(BLAST)

001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA

Arabidopsis Description

GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.