Factsheet for Solyc07g038160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011449	Potato	nucleus	89.85	83.57
Solyc12g008830.1.1	Tomato	nucleus	54.14	49.15
Solyc09g075610.2.1	Tomato	plastid	15.04	44.94
GSMUA_Achr2P15750_001	Banana	plastid	20.68	41.35
GSMUA_Achr10P...	Banana	mitochondrion	29.32	39.0
Solyc01g100220.2.1	Tomato	nucleus	18.42	32.89
VIT_04s0008g01290.t01	Wine grape	plastid	37.59	32.68
Solyc01g060490.2.1	Tomato	nucleus	19.55	30.41
GSMUA_Achr4P30820_001	Banana	nucleus	30.83	30.26
KRH61505	Soybean	nucleus	32.33	29.45
Solyc12g099370.1.1	Tomato	nucleus	18.42	29.17
KRH15535	Soybean	nucleus	30.83	26.8
KRH05458	Soybean	nucleus	30.45	26.47
Solyc05g054400.2.1	Tomato	nucleus	18.8	25.38
Os02t0220400-01	Rice	nucleus	31.58	23.8
TraesCS6A01G185900.1	Wheat	cytosol	30.08	23.39
TraesCS6D01G173000.1	Wheat	cytosol	29.7	23.1
TraesCS7D01G359900.1	Wheat	nucleus	30.83	22.84
HORVU7Hr1G086810.1	Barley	nucleus	30.83	22.78
TraesCS7A01G363100.1	Wheat	nucleus	30.45	22.75
HORVU6Hr1G039720.2	Barley	cytosol	29.32	22.67
TraesCS6B01G214900.1	Wheat	cytosol	28.95	22.51
TraesCS7B01G264800.1	Wheat	nucleus	30.45	22.44
Zm00001d046354_P001	Maize	nucleus	30.45	21.89
Zm00001d016361_P001	Maize	nucleus	29.32	21.08
Os06t0571800-02	Rice	nucleus	27.44	21.04
EER88552	Sorghum	nucleus	30.08	20.73
KXG29816	Sorghum	nucleus	29.32	20.16
Solyc02g085190.1.1	Tomato	plastid	18.8	19.84
Bra001644.1-P	Field mustard	nucleus	10.53	19.18
Solyc02g062760.2.1	Tomato	nucleus	16.54	17.32

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:K4CDP2	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF226	SMART:SM00401	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc07g038160.2	EnsemblPlants:Solyc07g038160.2.1	UniParc:UPI000276B421
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:45497420..45499235

Molecular Weight (calculated)

29717.3 Da

IEP (calculated)

10.004

GRAVY (calculated)

-0.794

Length

266 amino acids

Sequence
(BLAST)

001: MTPPDHITPN FPFGLNNSNN NSLVTPNYHF FFNSTTNQTA SFHHQHTQYY MQHEQLEVDN DGGSSYDLGK KNEVGSGLKL SLWKREDKLL SSEIKKLDQE
101: KKKNSTNSAC IKLKLGDQKQ KPIQTDYCSN NIPIRVCTDC NTTKTPLWRS GPKGPKSLCN ACGIRQRKAR RAMAAAAAEG KTDQKVQQHK QNITTKVTSN
201: NDVKPLKKRC KFGPSSSSTN NAPKKLGFED FLINLSNKLA FQQIFPQDEM EAAILLMALS SGLVHG

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.