Factsheet for Solyc02g085190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062760.2.1	nucleus, nucleus
Solyc02g085190.1.1	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	Solyc02g062760.2.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g062760.2.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g062760.2.1	AT4G36620.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT4G36620.1	23335616
AT3G50870.1	Solyc02g062760.2.1	AT4G36620.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT4G36620.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009031	Potato	plastid	89.68	91.5
KRH30068	Soybean	plastid	38.1	61.54
KRH28681	Soybean	nucleus	57.14	58.78
Solyc02g062760.2.1	Tomato	nucleus	54.37	53.94
KRH08269	Soybean	nucleus	52.78	52.99
KRH69915	Soybean	nucleus	49.6	49.6
CDY53079	Canola	cytosol	39.29	47.83
AT4G36620.1	Thale cress	cytosol	39.68	47.39
Bra010563.1-P	Field mustard	cytosol	39.68	46.95
CDY24779	Canola	nucleus	39.68	46.95
CDY69687	Canola	nucleus	34.13	45.5
CDY68627	Canola	nucleus	40.08	45.5
Bra011695.1-P	Field mustard	nucleus	40.08	45.29
CDY70754	Canola	nucleus	40.08	45.29
Bra017766.1-P	Field mustard	nucleus	33.73	44.97
CDX72587	Canola	cytosol	40.48	44.93
CDX69237	Canola	nucleus	39.68	44.84
CDY28986	Canola	cytosol	47.62	43.8
CDX77958	Canola	nucleus	46.03	43.61
Bra036854.1-P	Field mustard	nucleus	50.0	43.6
CDX73777	Canola	nucleus	50.0	43.45
CDY13040	Canola	cytosol	34.13	43.22
CDY72649	Canola	nucleus	34.13	43.0
CDX90680	Canola	nucleus	46.83	42.45
Bra012883.1-P	Field mustard	nucleus	46.83	42.45
AT3G50870.1	Thale cress	cytosol	49.21	42.03
CDY60289	Canola	nucleus	33.33	41.58
AT2G18380.1	Thale cress	cytosol	34.13	41.35
CDY51221	Canola	nucleus	32.94	41.29
Bra012080.1-P	Field mustard	nucleus	37.3	39.83
CDY45238	Canola	nucleus	37.3	39.83
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.43	39.42
CDY30768	Canola	nucleus	34.13	37.72
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	34.13	37.07
GSMUA_Achr7P25620_001	Banana	nucleus	33.73	36.48
Zm00001d043969_P001	Maize	endoplasmic reticulum	33.73	36.48
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	32.14	36.16
KXG33047	Sorghum	extracellular	34.92	36.07
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	34.52	35.95
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	29.76	35.55
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	32.14	35.22
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	32.14	34.91
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	32.14	34.62
Solyc09g075610.2.1	Tomato	plastid	11.9	33.71
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	26.59	33.0
Bra037221.1-P	Field mustard	nucleus	30.56	32.49
Os05t0567900-00	Rice	cytosol, extracellular, plastid	31.75	32.0
EES19963	Sorghum	mitochondrion, nucleus, vacuole	28.57	31.44
Solyc01g060490.2.1	Tomato	nucleus	17.06	25.15
Solyc12g099370.1.1	Tomato	nucleus	15.08	22.62
Solyc01g100220.2.1	Tomato	nucleus	12.7	21.48
Solyc05g054400.2.1	Tomato	nucleus	15.08	19.29
Solyc07g038160.2.1	Tomato	nucleus	19.84	18.8
Solyc12g008830.1.1	Tomato	nucleus	20.63	17.75

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:K4BB32	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc02g085190.1	EnsemblPlants:Solyc02g085190.1.1	UniParc:UPI0002769046
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:48166202..48167053

Molecular Weight (calculated)

27898.1 Da

IEP (calculated)

8.438

GRAVY (calculated)

-0.750

Length

252 amino acids

Sequence
(BLAST)

001: MMHRCSGSMV GPCSCGLFHN QSGSSGTTTS SAFSMLFSHE YSENMYSSSS SNVDCTLSLG TPSTRLINED NHEKRSSVYS KHERLRSSSN CISNFWDILH
101: PKQHVTTPQY KSTRGANNNS TTTDPLVARR CANCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRASAA AATANGGGGA ETTTHQHWVH HHHHSQPTKM
201: ACFSSASYGN EFRFIEDNEH HRDSDAAATA IPFFPWRLNV ADRPSLVHDF TR

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.