Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX73777 | nucleus |
| CDX77958 | nucleus |
| CDX88593 | nucleus |
| CDX89358 | nucleus |
| CDX90680 | nucleus |
| CDX94365 | nucleus |
| CDY20709 | nucleus |
| CDY24779 | nucleus |
| CDY28986 | nucleus |
| CDY32755 | nucleus |
| CDY32891 | nucleus |
| CDY42752 | nucleus |
| CDY42753 | nucleus |
| CDY53079 | nucleus |
| CDY65439 | nucleus |
| CDY67546 | nucleus |
| CDY67979 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90680 | Canola | nucleus | 96.35 | 94.96 |
| CDX77958 | Canola | nucleus | 75.18 | 77.44 |
| CDX73777 | Canola | nucleus | 80.29 | 75.86 |
| AT3G50870.1 | Thale cress | cytosol | 81.02 | 75.25 |
| CDY24779 | Canola | nucleus | 41.61 | 53.52 |
| CDX72587 | Canola | cytosol | 43.8 | 52.86 |
| CDY70754 | Canola | nucleus | 42.7 | 52.47 |
| CDY68627 | Canola | nucleus | 41.97 | 51.8 |
| CDY53079 | Canola | cytosol | 39.05 | 51.69 |
| CDY69687 | Canola | nucleus | 35.4 | 51.32 |
| CDX69237 | Canola | nucleus | 41.61 | 51.12 |
| Solyc02g085190.1.1 | Tomato | plastid | 43.8 | 47.62 |
| PGSC0003DMT400009031 | Potato | plastid | 41.61 | 46.15 |
| CDY72649 | Canola | nucleus | 33.58 | 46.0 |
| CDY13040 | Canola | cytosol | 32.85 | 45.23 |
| CDY60289 | Canola | nucleus | 33.21 | 45.05 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 39.42 | 45.0 |
| CDY51221 | Canola | nucleus | 31.75 | 43.28 |
| CDY45238 | Canola | nucleus | 37.23 | 43.22 |
| CDY30768 | Canola | nucleus | 35.04 | 42.11 |
| PGSC0003DMT400040074 | Potato | nucleus | 35.04 | 38.71 |
| Solyc02g062760.2.1 | Tomato | nucleus | 35.04 | 37.8 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 31.39 | 37.07 |
| KRH43324 | Soybean | nucleus | 18.25 | 36.76 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 29.56 | 34.76 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 26.64 | 34.6 |
| KXG33047 | Sorghum | extracellular | 30.29 | 34.02 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 24.82 | 33.5 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 27.37 | 33.48 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 28.1 | 33.05 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 27.74 | 33.04 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 27.74 | 32.76 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 28.83 | 32.64 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 27.74 | 32.48 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 26.28 | 31.44 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 28.47 | 31.2 |
| CDY25008 | Canola | nucleus | 10.95 | 30.0 |
| CDX87024 | Canola | nucleus | 10.95 | 29.13 |
| CDX86241 | Canola | nucleus | 12.41 | 26.77 |
| CDY68751 | Canola | cytosol, mitochondrion | 9.85 | 26.73 |
| CDX85400 | Canola | nucleus | 12.04 | 25.98 |
| CDY05639 | Canola | nucleus | 12.41 | 25.95 |
| CDY33918 | Canola | nucleus | 12.41 | 24.11 |
| CDY34933 | Canola | nucleus | 12.04 | 23.57 |
| CDX95897 | Canola | nucleus | 12.77 | 21.34 |
| CDX92103 | Canola | nucleus | 12.77 | 21.08 |
| CDY34429 | Canola | cytosol | 11.68 | 20.91 |
| CDX90545 | Canola | nucleus | 10.95 | 20.41 |
| CDX82388 | Canola | nucleus | 11.68 | 18.39 |
| CDY34981 | Canola | nucleus | 11.31 | 18.13 |
| CDY09717 | Canola | nucleus | 11.68 | 18.08 |
| CDX75893 | Canola | nucleus | 12.04 | 18.03 |
| CDY32214 | Canola | nucleus | 11.68 | 17.88 |
| CDY52723 | Canola | nucleus | 11.68 | 17.78 |
| CDX80603 | Canola | nucleus | 9.49 | 17.69 |
| CDX88593 | Canola | nucleus | 19.71 | 15.21 |
| CDY65439 | Canola | nucleus | 19.71 | 14.06 |
| CDY20709 | Canola | nucleus | 20.07 | 13.96 |
| CDY67979 | Canola | nucleus | 19.71 | 13.78 |
| CDY32891 | Canola | nucleus | 18.98 | 13.4 |
| CDY32755 | Canola | nucleus | 18.61 | 13.18 |
| CDX94365 | Canola | nucleus | 17.15 | 13.06 |
| CDY42753 | Canola | nucleus | 17.52 | 12.97 |
| CDY42752 | Canola | nucleus | 17.52 | 12.97 |
| CDX89358 | Canola | nucleus | 16.79 | 12.78 |
| CDY67546 | Canola | nucleus | 16.79 | 12.23 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078GU00 | UniProt:A0A078GU00 | EnsemblPlants:CDY28986 | ProteinID:CDY28986 |
| ProteinID:CDY28986.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00041707001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EC2893 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC07g31920DBnaC07g31920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU00]
Coordinates
chrLK032229:+:53403..54581
Molecular Weight (calculated)
29924.9 Da
IEP (calculated)
7.645
GRAVY (calculated)
-0.854
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MMHTPYNTST QGQYCHYCAM FHHHSQSCCY NNNNSNAGVY EQNGEDYYSS SVVDCTLSLG TPSTRLCEED ENRRRTTSYG PSSCISNFWD LIHTKNNNSN
101: TKPSFDFPSF STGNPIKPTR GCPSGNGGGD SLLARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRTTAASGNA VVGASPVAGD PYGHHNASYN
201: ITTSHNNSGT SWAQHTTQRA PCNYPANEIR FMDDYSSPGA NNNGDSDGSH GGVPFLSWRL NVADRASLVN DFTR
101: TKPSFDFPSF STGNPIKPTR GCPSGNGGGD SLLARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRTTAASGNA VVGASPVAGD PYGHHNASYN
201: ITTSHNNSGT SWAQHTTQRA PCNYPANEIR FMDDYSSPGA NNNGDSDGSH GGVPFLSWRL NVADRASLVN DFTR
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.