Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022184.1-P | Field mustard | nucleus | 99.4 | 99.4 |
| CDX95897 | Canola | nucleus | 91.57 | 92.68 |
| CDY34981 | Canola | nucleus | 80.12 | 77.78 |
| CDY52723 | Canola | nucleus | 81.33 | 75.0 |
| CDX75893 | Canola | nucleus | 76.51 | 69.4 |
| AT3G16870.1 | Thale cress | nucleus | 78.31 | 68.42 |
| CDX82388 | Canola | nucleus | 71.69 | 68.39 |
| CDY34429 | Canola | cytosol | 62.65 | 67.97 |
| CDX90545 | Canola | nucleus | 59.04 | 66.67 |
| CDY09717 | Canola | nucleus | 65.66 | 61.58 |
| CDY32214 | Canola | nucleus | 62.65 | 58.1 |
| CDY05639 | Canola | nucleus | 43.37 | 54.96 |
| CDX85400 | Canola | nucleus | 40.96 | 53.54 |
| CDX86241 | Canola | nucleus | 40.36 | 52.76 |
| CDY33918 | Canola | nucleus | 43.98 | 51.77 |
| CDX87024 | Canola | nucleus | 30.12 | 48.54 |
| CDY25008 | Canola | nucleus | 28.92 | 48.0 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 33.13 | 44.35 |
| CDY34933 | Canola | nucleus | 36.75 | 43.57 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 36.75 | 40.94 |
| Solyc12g099370.1.1 | Tomato | nucleus | 40.96 | 40.48 |
| PGSC0003DMT400011779 | Potato | nucleus | 40.96 | 40.48 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 32.53 | 38.03 |
| Solyc05g054400.2.1 | Tomato | nucleus | 43.98 | 37.06 |
| PGSC0003DMT400060241 | Potato | nucleus | 42.77 | 36.04 |
| Os01t0976800-01 | Rice | nucleus | 30.72 | 35.92 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 30.12 | 35.21 |
| KXG32453 | Sorghum | nucleus | 25.9 | 34.4 |
| EER93149 | Sorghum | nucleus | 32.53 | 34.39 |
| Zm00001d037605_P001 | Maize | nucleus | 29.52 | 34.27 |
| CDY68751 | Canola | cytosol, mitochondrion | 20.48 | 33.66 |
| Os01t0343300-01 | Rice | nucleus | 26.51 | 33.59 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 25.3 | 33.33 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 31.93 | 32.72 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 31.93 | 32.72 |
| Zm00001d034751_P001 | Maize | nucleus | 31.93 | 32.52 |
| Zm00001d009193_P001 | Maize | plastid | 27.11 | 32.37 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 32.53 | 32.14 |
| CDX80603 | Canola | nucleus | 27.71 | 31.29 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 31.33 | 31.14 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 32.53 | 30.17 |
| KXG21349 | Sorghum | cytosol | 28.31 | 30.13 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 32.53 | 30.0 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 25.9 | 29.45 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 25.9 | 29.45 |
| Zm00001d040775_P001 | Maize | nucleus | 25.9 | 29.25 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 22.89 | 28.36 |
| EES04307 | Sorghum | nucleus | 35.54 | 27.19 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 29.52 | 27.07 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 25.9 | 27.04 |
| Zm00001d011771_P001 | Maize | nucleus | 31.33 | 26.67 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 29.52 | 25.39 |
| HORVU1Hr1G022710.3 | Barley | plastid | 25.9 | 19.91 |
| CDY60289 | Canola | nucleus | 21.08 | 17.33 |
| CDY13040 | Canola | cytosol | 20.48 | 17.09 |
| CDY72649 | Canola | nucleus | 20.48 | 17.0 |
| CDY51221 | Canola | nucleus | 20.48 | 16.92 |
| CDY53079 | Canola | cytosol | 21.08 | 16.91 |
| CDY69687 | Canola | nucleus | 18.07 | 15.87 |
| CDY70754 | Canola | nucleus | 21.08 | 15.7 |
| CDY68627 | Canola | nucleus | 20.48 | 15.32 |
| CDX69237 | Canola | nucleus | 20.48 | 15.25 |
| CDY24779 | Canola | nucleus | 19.28 | 15.02 |
| CDX72587 | Canola | cytosol | 20.48 | 14.98 |
| CDY45238 | Canola | nucleus | 21.08 | 14.83 |
| CDY30768 | Canola | nucleus | 19.28 | 14.04 |
| CDX88593 | Canola | nucleus | 29.52 | 13.8 |
| CDX94365 | Canola | nucleus | 29.52 | 13.61 |
| CDX89358 | Canola | nucleus | 29.52 | 13.61 |
| CDX77958 | Canola | nucleus | 21.69 | 13.53 |
| CDY28986 | Canola | cytosol | 21.08 | 12.77 |
| CDX73777 | Canola | nucleus | 22.29 | 12.76 |
| CDY32755 | Canola | nucleus | 29.52 | 12.66 |
| CDY65439 | Canola | nucleus | 28.92 | 12.5 |
| CDY42752 | Canola | nucleus | 27.71 | 12.43 |
| CDY42753 | Canola | nucleus | 27.71 | 12.43 |
| CDY32891 | Canola | nucleus | 28.92 | 12.37 |
| CDX90680 | Canola | nucleus | 20.48 | 12.23 |
| CDY67979 | Canola | nucleus | 28.31 | 11.99 |
| CDY67546 | Canola | nucleus | 27.11 | 11.97 |
| CDY20709 | Canola | nucleus | 27.71 | 11.68 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078DXW6 | EnsemblPlants:CDX92103 | ProteinID:CDX92103 | ProteinID:CDX92103.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00153792001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EEA97A | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaA05g23040D
Coordinates
chrLK031871:-:210920..211582
Molecular Weight (calculated)
17756.1 Da
IEP (calculated)
9.145
GRAVY (calculated)
-0.551
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDGSEETKT KLDSSGESSD VDNENCISSG GGSSGEAKRT CVDCGTFRTP LWRGGPAGPK SLCNACGIKS RKKRQAALGI KPEKKIRKSI IITSDTSDLS
101: LEDDDHKTCS SSSSKGISRF LDLGFKVPVM KRSSVEKKKR LWSKLGEEER AAAVLLMALS CASVYA
101: LEDDDHKTCS SSSSKGISRF LDLGFKVPVM KRSSVEKKKR LWSKLGEEER AAAVLLMALS CASVYA
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.