Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89358 | Canola | nucleus | 93.89 | 93.89 |
| CDY42752 | Canola | nucleus | 71.39 | 69.46 |
| CDY42753 | Canola | nucleus | 71.11 | 69.19 |
| CDY67546 | Canola | nucleus | 70.28 | 67.29 |
| AT4G26150.1 | Thale cress | cytosol | 60.56 | 61.93 |
| CDY67979 | Canola | nucleus | 51.94 | 47.7 |
| CDY32891 | Canola | nucleus | 51.11 | 47.42 |
| CDY32755 | Canola | nucleus | 50.56 | 47.03 |
| CDY20709 | Canola | nucleus | 50.83 | 46.45 |
| CDY65439 | Canola | nucleus | 49.17 | 46.09 |
| CDX88593 | Canola | nucleus | 45.0 | 45.63 |
| CDY25008 | Canola | nucleus | 10.83 | 39.0 |
| CDX87024 | Canola | nucleus | 11.11 | 38.84 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 22.5 | 37.16 |
| CDX85400 | Canola | nucleus | 12.78 | 36.22 |
| CDY05639 | Canola | nucleus | 13.06 | 35.88 |
| KRH19153 | Soybean | nucleus | 31.11 | 35.67 |
| CDX86241 | Canola | nucleus | 12.5 | 35.43 |
| CDY33918 | Canola | nucleus | 13.61 | 34.75 |
| KRH02716 | Soybean | nucleus | 30.28 | 33.85 |
| KRH12382 | Soybean | nucleus | 28.61 | 32.7 |
| CDY68751 | Canola | cytosol, mitochondrion | 9.17 | 32.67 |
| CDY34933 | Canola | nucleus | 12.5 | 32.14 |
| CDX90545 | Canola | nucleus | 13.06 | 31.97 |
| CDY34429 | Canola | cytosol | 13.33 | 31.37 |
| CDY34981 | Canola | nucleus | 14.17 | 29.82 |
| CDX92103 | Canola | nucleus | 13.61 | 29.52 |
| KRH37384 | Soybean | nucleus | 27.5 | 29.38 |
| CDY52723 | Canola | nucleus | 14.44 | 28.89 |
| CDX82388 | Canola | nucleus | 13.89 | 28.74 |
| CDX95897 | Canola | nucleus | 12.5 | 27.44 |
| CDY32214 | Canola | nucleus | 13.61 | 27.37 |
| CDX75893 | Canola | nucleus | 13.89 | 27.32 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 27.22 | 27.3 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 26.94 | 27.25 |
| CDY09717 | Canola | nucleus | 13.33 | 27.12 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 26.94 | 26.94 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 25.56 | 26.9 |
| Zm00001d016361_P001 | Maize | nucleus | 27.5 | 26.76 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 25.56 | 26.74 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 25.28 | 26.61 |
| Zm00001d046354_P001 | Maize | nucleus | 27.22 | 26.49 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.39 | 26.32 |
| EER88552 | Sorghum | nucleus | 27.5 | 25.65 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 24.17 | 25.44 |
| KXG29816 | Sorghum | nucleus | 27.22 | 25.32 |
| CDX80603 | Canola | nucleus | 10.28 | 25.17 |
| Os06t0571800-02 | Rice | nucleus | 23.89 | 24.78 |
| Os02t0220400-01 | Rice | nucleus | 23.89 | 24.36 |
| CDY68627 | Canola | nucleus | 11.94 | 19.37 |
| CDY13040 | Canola | cytosol | 10.56 | 19.1 |
| CDX69237 | Canola | nucleus | 11.67 | 18.83 |
| CDY69687 | Canola | nucleus | 9.72 | 18.52 |
| CDY70754 | Canola | nucleus | 11.39 | 18.39 |
| CDY53079 | Canola | cytosol | 10.56 | 18.36 |
| CDX72587 | Canola | cytosol | 11.39 | 18.06 |
| CDY72649 | Canola | nucleus | 10.0 | 18.0 |
| CDY24779 | Canola | nucleus | 10.56 | 17.84 |
| CDY60289 | Canola | nucleus | 9.72 | 17.33 |
| CDX77958 | Canola | nucleus | 12.78 | 17.29 |
| CDY28986 | Canola | cytosol | 13.06 | 17.15 |
| CDY51221 | Canola | nucleus | 9.44 | 16.92 |
| CDX90680 | Canola | nucleus | 13.06 | 16.91 |
| CDX73777 | Canola | nucleus | 13.33 | 16.55 |
| CDY45238 | Canola | nucleus | 10.56 | 16.1 |
| CDY30768 | Canola | nucleus | 9.72 | 15.35 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078DYE0 | EnsemblPlants:CDX94365 | ProteinID:CDX94365 | ProteinID:CDX94365.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00157484001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF191 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EC71EA | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC01g18190D
Coordinates
chrLK031881:-:533431..535431
Molecular Weight (calculated)
40183.9 Da
IEP (calculated)
9.597
GRAVY (calculated)
-0.819
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSFHYTID LNEDQIDQPF FSHLGSSLHH NQHHHDDDHL APSNLSSSSS SLTPSSLSHL SFFINSHQDQ IHVGYNNNTF QGFLDPHLSQ SLETKKFVSN
101: SGSPSSDQVV PKKEARLKLT KRKKDNHHDH EQVKLMKRKT MITTTENNKQ HVNNDQSMNK RNFEGDDHDH LKKISANQYN IVNETGYNGS NNGVIRICSD
201: CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RQAAMAAAAA TTNSEYLSPP LLKKKMQSKY KRSNEVSNLY SSLASKVKKC KSMSTSVEEA ISVMERTAAE
301: TQGKSTMSRS SSTSSSSNKF YYDDLAMILS KSSAYQQVFP QDEKDAAILL MALSYGMVHG
101: SGSPSSDQVV PKKEARLKLT KRKKDNHHDH EQVKLMKRKT MITTTENNKQ HVNNDQSMNK RNFEGDDHDH LKKISANQYN IVNETGYNGS NNGVIRICSD
201: CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RQAAMAAAAA TTNSEYLSPP LLKKKMQSKY KRSNEVSNLY SSLASKVKKC KSMSTSVEEA ISVMERTAAE
301: TQGKSTMSRS SSTSSSSNKF YYDDLAMILS KSSAYQQVFP QDEKDAAILL MALSYGMVHG
001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
Arabidopsis Description
GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.