Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92103 | Canola | nucleus | 92.68 | 91.57 |
| Bra022184.1-P | Field mustard | nucleus | 92.07 | 90.96 |
| CDY34981 | Canola | nucleus | 81.1 | 77.78 |
| CDY52723 | Canola | nucleus | 81.71 | 74.44 |
| CDX82388 | Canola | nucleus | 76.83 | 72.41 |
| CDX75893 | Canola | nucleus | 79.27 | 71.04 |
| CDY34429 | Canola | cytosol | 65.24 | 69.93 |
| CDX90545 | Canola | nucleus | 62.2 | 69.39 |
| AT3G16870.1 | Thale cress | nucleus | 79.88 | 68.95 |
| CDY09717 | Canola | nucleus | 68.29 | 63.28 |
| CDY32214 | Canola | nucleus | 65.24 | 59.78 |
| CDY05639 | Canola | nucleus | 41.46 | 51.91 |
| CDX85400 | Canola | nucleus | 39.63 | 51.18 |
| CDX86241 | Canola | nucleus | 39.02 | 50.39 |
| CDY33918 | Canola | nucleus | 42.07 | 48.94 |
| CDY25008 | Canola | nucleus | 29.27 | 48.0 |
| CDX87024 | Canola | nucleus | 29.27 | 46.6 |
| CDY34933 | Canola | nucleus | 35.37 | 41.43 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 31.1 | 41.13 |
| PGSC0003DMT400011779 | Potato | nucleus | 40.24 | 39.29 |
| Solyc12g099370.1.1 | Tomato | nucleus | 40.24 | 39.29 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 35.37 | 38.93 |
| Os01t0976800-01 | Rice | nucleus | 30.49 | 35.21 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 30.49 | 35.21 |
| Solyc05g054400.2.1 | Tomato | nucleus | 42.07 | 35.03 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 29.88 | 34.51 |
| PGSC0003DMT400060241 | Potato | nucleus | 40.85 | 34.01 |
| EER93149 | Sorghum | nucleus | 32.32 | 33.76 |
| CDY68751 | Canola | cytosol, mitochondrion | 20.73 | 33.66 |
| Os01t0343300-01 | Rice | nucleus | 26.22 | 32.82 |
| KXG32453 | Sorghum | nucleus | 25.0 | 32.8 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 32.32 | 32.72 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 32.32 | 32.72 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 25.0 | 32.54 |
| Zm00001d034751_P001 | Maize | nucleus | 32.32 | 32.52 |
| CDX80603 | Canola | nucleus | 28.66 | 31.97 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 32.32 | 31.55 |
| Zm00001d037605_P001 | Maize | nucleus | 27.44 | 31.47 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 31.71 | 31.14 |
| Zm00001d009193_P001 | Maize | plastid | 26.22 | 30.94 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 32.32 | 29.61 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 32.32 | 29.44 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 25.61 | 28.77 |
| Zm00001d040775_P001 | Maize | nucleus | 25.61 | 28.57 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 23.17 | 28.36 |
| KXG21349 | Sorghum | cytosol | 26.83 | 28.21 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 25.0 | 28.08 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 29.88 | 27.07 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 25.0 | 25.79 |
| Zm00001d011771_P001 | Maize | nucleus | 30.49 | 25.64 |
| EES04307 | Sorghum | nucleus | 33.54 | 25.35 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 28.66 | 24.35 |
| HORVU1Hr1G022710.3 | Barley | plastid | 25.0 | 18.98 |
| CDY60289 | Canola | nucleus | 21.34 | 17.33 |
| CDY13040 | Canola | cytosol | 20.73 | 17.09 |
| CDY72649 | Canola | nucleus | 20.73 | 17.0 |
| CDY51221 | Canola | nucleus | 20.73 | 16.92 |
| CDY53079 | Canola | cytosol | 21.34 | 16.91 |
| CDY69687 | Canola | nucleus | 18.29 | 15.87 |
| CDY70754 | Canola | nucleus | 21.34 | 15.7 |
| CDY68627 | Canola | nucleus | 20.73 | 15.32 |
| CDX69237 | Canola | nucleus | 20.73 | 15.25 |
| CDY24779 | Canola | nucleus | 19.51 | 15.02 |
| CDX72587 | Canola | cytosol | 20.73 | 14.98 |
| CDY45238 | Canola | nucleus | 20.73 | 14.41 |
| CDY30768 | Canola | nucleus | 18.9 | 13.6 |
| CDX77958 | Canola | nucleus | 21.95 | 13.53 |
| CDY28986 | Canola | cytosol | 21.34 | 12.77 |
| CDX73777 | Canola | nucleus | 22.56 | 12.76 |
| CDX89358 | Canola | nucleus | 27.44 | 12.5 |
| CDX94365 | Canola | nucleus | 27.44 | 12.5 |
| CDX90680 | Canola | nucleus | 20.73 | 12.23 |
| CDX88593 | Canola | nucleus | 26.22 | 12.11 |
| CDY42752 | Canola | nucleus | 26.22 | 11.62 |
| CDY42753 | Canola | nucleus | 26.22 | 11.62 |
| CDY32755 | Canola | nucleus | 26.83 | 11.37 |
| CDY32891 | Canola | nucleus | 26.83 | 11.34 |
| CDY67546 | Canola | nucleus | 25.61 | 11.17 |
| CDY67979 | Canola | nucleus | 26.22 | 10.97 |
| CDY65439 | Canola | nucleus | 25.61 | 10.94 |
| CDY20709 | Canola | nucleus | 26.22 | 10.91 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078E432 | EnsemblPlants:CDX95897 | ProteinID:CDX95897 | ProteinID:CDX95897.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00101895001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EB8D96 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC05g36480D
Coordinates
chrLK031891:+:1237231..1238011
Molecular Weight (calculated)
17546.8 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.602
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGSEETKT KLDSAGESSD VDNENCISSG SGGGSSGETK RTCVDCGTFR TPLWRGGPAG PKSLCNACGI KSRKKTQAAL GIKPEKKIRN SIITSDSSDL
101: SLEDDDDHKT CSSKGMSRFL DLGFKVPVMK RSSVEKKKRL WSKLGEEERA ALLLMALSCA SVYA
101: SLEDDDDHKT CSSKGMSRFL DLGFKVPVMK RSSVEKKKRL WSKLGEEERA ALLLMALSCA SVYA
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.