Factsheet for Bra022184.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92103	Canola	nucleus	99.4	99.4
CDX95897	Canola	nucleus	90.96	92.07
Bra021209.1-P	Field mustard	nucleus	80.72	78.36
AT3G16870.1	Thale cress	nucleus	77.71	67.89
Bra012742.1-P	Field mustard	nucleus	65.66	65.27
Bra033533.1-P	Field mustard	nucleus	62.65	58.1
Bra037421.1-P	Field mustard	nucleus	40.36	52.76
Bra001644.1-P	Field mustard	nucleus	45.18	51.37
Bra020650.1-P	Field mustard	nucleus	42.77	50.71
Bra036600.1-P	Field mustard	nucleus	29.52	47.57
GSMUA_Achr3P00700_001	Banana	nucleus	33.13	44.35
Bra040288.1-P	Field mustard	nucleus	36.75	43.88
Bra009926.1-P	Field mustard	cytosol	20.48	43.04
PGSC0003DMT400011779	Potato	nucleus	40.96	40.48
Solyc12g099370.1.1	Tomato	nucleus	40.96	40.48
GSMUA_Achr8P33850_001	Banana	nucleus	36.14	40.27
GSMUA_Achr1P26550_001	Banana	nucleus	32.53	38.03
Solyc05g054400.2.1	Tomato	nucleus	43.98	37.06
PGSC0003DMT400060241	Potato	nucleus	42.77	36.04
Os01t0976800-01	Rice	nucleus	30.12	35.21
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	30.12	35.21
KXG32453	Sorghum	nucleus	25.9	34.4
Zm00001d037605_P001	Maize	nucleus	29.52	34.27
EER93149	Sorghum	nucleus	31.93	33.76
Os01t0343300-01	Rice	nucleus	26.51	33.59
GSMUA_Achr1P14780_001	Banana	nucleus	25.3	33.33
Zm00001d009193_P001	Maize	plastid	27.11	32.37
TraesCS5D01G508800.1	Wheat	nucleus	31.33	32.1
HORVU5Hr1G116310.1	Barley	nucleus	31.33	32.1
Zm00001d034751_P001	Maize	nucleus	31.33	31.9
TraesCS3A01G538400.1	Wheat	nucleus	31.93	31.55
TraesCS5B01G508800.1	Wheat	nucleus	30.72	30.54
KXG21349	Sorghum	cytosol	28.31	30.13
TraesCS3D01G544000.1	Wheat	nucleus	31.93	29.61
TraesCS1B01G126600.1	Wheat	cytosol	25.9	29.45
TraesCS1D01G106100.1	Wheat	cytosol	25.9	29.45
TraesCS3B01G603900.1	Wheat	nucleus	31.93	29.44
Zm00001d040775_P001	Maize	nucleus	25.9	29.25
HORVU6Hr1G093630.3	Barley	mitochondrion	22.89	28.36
TraesCS1A01G097300.1	Wheat	cytosol	25.9	27.04
EES04307	Sorghum	nucleus	34.94	26.73
TraesCS4A01G364700.1	Wheat	nucleus	28.92	26.52
Zm00001d011771_P001	Maize	nucleus	30.72	26.15
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	29.52	25.39
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.87	20.44
HORVU1Hr1G022710.3	Barley	plastid	25.9	19.91
Bra017766.1-P	Field mustard	nucleus	17.47	15.34
Bra035633.1-P	Field mustard	nucleus	27.71	15.28
Bra011695.1-P	Field mustard	nucleus	20.48	15.25
Bra037221.1-P	Field mustard	nucleus	21.08	14.77
Bra010563.1-P	Field mustard	cytosol	18.67	14.55
Bra012080.1-P	Field mustard	nucleus	20.48	14.41
Bra026461.1-P	Field mustard	nucleus	29.52	13.61
Bra006851.1-P	Field mustard	nucleus, plastid	29.52	12.76
Bra002788.1-P	Field mustard	nucleus	29.52	12.66
Bra036854.1-P	Field mustard	nucleus	21.69	12.46
Bra019118.1-P	Field mustard	nucleus	28.31	12.11
Bra012883.1-P	Field mustard	nucleus	19.88	11.87

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra022184	EnsemblPlants:Bra022184.1	EnsemblPlants:Bra022184.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4E087	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002547725
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT3G16870 (E=1e-036) | zinc finger (GATA type) family protein

Coordinates

chrA05:+:19225646..19226240

Molecular Weight (calculated)

17770.1 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.537

Length

166 amino acids

Sequence
(BLAST)

001: MSDGSEETKT KLDSSGESSD VDNENCISSG GGSSAEAKRT CVDCGTFRTP LWRGGPAGPK SLCNACGIKS RKKRQAALGI KPEKKIRKSI IITSDTSDLS
101: LEDDDHKTCS SSSSKGISRF LDLGFKVPVM KRSSVEKKKR LWSKLGEEER AAAVLLMALS CASVYA

Best Arabidopsis Sequence Match ( AT3G16870.1 )
(BLAST)

001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA

Arabidopsis Description

GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.