Factsheet for Bra012883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002788.1-P	nucleus
Bra006851.1-P	nucleus
Bra010563.1-P	nucleus
Bra012883.1-P	nucleus
Bra019118.1-P	nucleus
Bra026461.1-P	nucleus
Bra035633.1-P	nucleus
Bra036854.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	Bra012883.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra036854.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra012883.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra036854.1-P	AT3G50870.1	23335616
AT3G50870.1	Bra019118.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra026461.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra019118.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra026461.1-P	AT4G26150.1	23335616
AT3G50870.1	Bra010563.1-P	AT4G36620.1	23335616
AT3G50870.1	Bra010563.1-P	AT4G36620.1	23335616
AT3G50870.1	Bra002788.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra006851.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra035633.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra002788.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra006851.1-P	AT5G56860.1	23335616
AT3G50870.1	Bra035633.1-P	AT5G56860.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90680	Canola	nucleus	100.0	100.0
Bra036854.1-P	Field mustard	nucleus	79.5	76.47
AT3G50870.1	Thale cress	cytosol	80.58	75.93
Bra010563.1-P	Field mustard	cytosol	40.65	53.05
Bra011695.1-P	Field mustard	nucleus	41.37	51.57
Bra017766.1-P	Field mustard	nucleus	34.53	50.79
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.1	48.91
Solyc02g085190.1.1	Tomato	plastid	42.45	46.83
PGSC0003DMT400009031	Potato	plastid	39.93	44.94
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	37.77	43.75
Bra012080.1-P	Field mustard	nucleus	36.33	42.8
PGSC0003DMT400040074	Potato	nucleus	34.17	38.31
Solyc02g062760.2.1	Tomato	nucleus	34.17	37.4
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	30.58	36.64
KRH43324	Soybean	nucleus	17.63	36.03
Bra009926.1-P	Field mustard	cytosol	9.71	34.18
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	25.9	34.12
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	24.82	33.99
Zm00001d043969_P001	Maize	endoplasmic reticulum	28.06	33.48
KXG33047	Sorghum	extracellular	28.78	32.79
GSMUA_Achr7P25620_001	Banana	nucleus	27.34	32.62
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	26.26	32.59
Bra037221.1-P	Field mustard	nucleus	27.7	32.49
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	27.7	31.82
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	26.26	31.74
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	26.26	31.47
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	26.26	31.2
EES19963	Sorghum	mitochondrion, nucleus, vacuole	25.54	31.0
Os05t0567900-00	Rice	cytosol, extracellular, plastid	27.34	30.4
Bra036600.1-P	Field mustard	nucleus	10.79	29.13
Bra037421.1-P	Field mustard	nucleus	12.23	26.77
Bra020650.1-P	Field mustard	nucleus	12.59	25.0
Bra040288.1-P	Field mustard	nucleus	11.51	23.02
Bra022184.1-P	Field mustard	nucleus	11.87	19.88
Bra012742.1-P	Field mustard	nucleus	11.15	18.56
Bra021209.1-P	Field mustard	nucleus	10.79	17.54
Bra033533.1-P	Field mustard	nucleus	11.15	17.32
Bra035633.1-P	Field mustard	nucleus	17.63	16.28
Bra006851.1-P	Field mustard	nucleus, plastid	19.78	14.32
Bra002788.1-P	Field mustard	nucleus	18.35	13.18
Bra026461.1-P	Field mustard	nucleus	16.55	12.78
Bra019118.1-P	Field mustard	nucleus	17.27	12.37
Bra001644.1-P	Field mustard	nucleus	5.04	9.59

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra012883	EnsemblPlants:Bra012883.1	EnsemblPlants:Bra012883.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4D8S3	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002540662
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT3G50870 (E=3e-099) MNP | MNP (MONOPOLE); transcription factor

Coordinates

chrA03:+:21787616..21788796

Molecular Weight (calculated)

30415.5 Da

IEP (calculated)

7.657

GRAVY (calculated)

-0.871

Length

278 amino acids

Sequence
(BLAST)

001: MMHTPYNTST QGQYCHYCAM FHHHSQSCCY NNNNNSNAGV YEQNGEDYYS SSVVDCTLSL GTPSTRLCEE DEKRKRTTSY GPSSCISNFL DLIHTKNNNS
101: NTKPSFDFPS FSTGNPIKPT RGCPSGNGGG DSLLARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRTTTASGN AVVGASPIAG DPYGHHNASY
201: NNYNITTSHN NSGTSWAQHT TQRAPCNYPA NEIRFMDDYS STGADNNGDS DGSHGGVPFL SWRLNVADRA SLVHDFTR

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.