Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400009031 | nucleus, nucleus |
| PGSC0003DMT400040074 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g062760.2.1 | Tomato | nucleus | 90.73 | 88.58 |
| PGSC0003DMT400009031 | Potato | plastid | 54.03 | 54.25 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 49.6 | 51.25 |
| CDY72649 | Canola | nucleus | 36.29 | 45.0 |
| CDY13040 | Canola | cytosol | 35.89 | 44.72 |
| Bra017766.1-P | Field mustard | nucleus | 31.85 | 41.8 |
| CDY69687 | Canola | nucleus | 31.45 | 41.27 |
| CDY60289 | Canola | nucleus | 33.47 | 41.09 |
| CDY51221 | Canola | nucleus | 33.06 | 40.8 |
| AT2G18380.1 | Thale cress | cytosol | 33.87 | 40.38 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 22.18 | 40.15 |
| CDY53079 | Canola | cytosol | 32.66 | 39.13 |
| CDY24779 | Canola | nucleus | 32.66 | 38.03 |
| CDX77958 | Canola | nucleus | 40.73 | 37.97 |
| AT4G36620.1 | Thale cress | cytosol | 32.26 | 37.91 |
| CDX73777 | Canola | nucleus | 43.95 | 37.59 |
| Bra010563.1-P | Field mustard | cytosol | 32.26 | 37.56 |
| Bra036854.1-P | Field mustard | nucleus | 43.55 | 37.37 |
| CDY68627 | Canola | nucleus | 32.66 | 36.49 |
| CDY70754 | Canola | nucleus | 32.66 | 36.32 |
| Bra011695.1-P | Field mustard | nucleus | 32.66 | 36.32 |
| CDX72587 | Canola | cytosol | 33.06 | 36.12 |
| CDX69237 | Canola | nucleus | 32.26 | 35.87 |
| CDY30768 | Canola | nucleus | 32.66 | 35.53 |
| CDY28986 | Canola | cytosol | 38.71 | 35.04 |
| CDY45238 | Canola | nucleus | 33.06 | 34.75 |
| Bra012080.1-P | Field mustard | nucleus | 33.06 | 34.75 |
| AT3G50870.1 | Thale cress | cytosol | 40.73 | 34.24 |
| Bra012883.1-P | Field mustard | nucleus | 38.31 | 34.17 |
| CDX90680 | Canola | nucleus | 38.31 | 34.17 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 29.03 | 34.12 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 30.65 | 32.76 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 30.65 | 32.62 |
| Bra037221.1-P | Field mustard | nucleus | 30.24 | 31.65 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 28.23 | 31.25 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 29.03 | 30.9 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 28.63 | 30.87 |
| KXG33047 | Sorghum | extracellular | 30.24 | 30.74 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 28.63 | 30.6 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 28.63 | 30.34 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 24.6 | 30.05 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 28.63 | 29.34 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 25.0 | 27.07 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 27.02 | 26.8 |
| PGSC0003DMT400081417 | Potato | nucleus | 11.29 | 26.42 |
| PGSC0003DMT400006011 | Potato | nucleus | 14.11 | 20.96 |
| PGSC0003DMT400011779 | Potato | nucleus | 13.31 | 19.64 |
| PGSC0003DMT400063771 | Potato | nucleus | 10.89 | 17.88 |
| PGSC0003DMT400060241 | Potato | nucleus | 13.71 | 17.26 |
| PGSC0003DMT400011449 | Potato | nucleus | 18.15 | 15.73 |
| PGSC0003DMT400000761 | Potato | nucleus | 17.34 | 14.98 |
Protein Annotations
| EntrezGene:102604842 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | UniProt:M1B993 | PFAM:PF00320 | EnsemblPlantsGene:PGSC0003DMG400015502 | PGSC:PGSC0003DMG400015502 | EnsemblPlants:PGSC0003DMT400040074 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 |
| UniParc:UPI0002952ABF | RefSeq:XP_006346995.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015502]
Coordinates
chr2:+:21158093..21159251
Molecular Weight (calculated)
27396.0 Da
IEP (calculated)
7.706
GRAVY (calculated)
-0.972
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSCGNAYCH GGPCSCNLYY GHENNAYSMF YSTHHEYQKD ENYSENMYSF ASSPSSSSSS VDCTLSLGTP STRLSTTNDE KRVHDEQRRS SSSYMSKCWN
101: ILQNKNHTSS THHHKSGRGS NNVNSGSNNA DPLVARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASAAAAA NGNAGGIGME SSTQHTINGS
201: WAHNSQGQKM PCYTSAYGNH EFRFIEDHDD RDSDNAISFW PFLASQHC
101: ILQNKNHTSS THHHKSGRGS NNVNSGSNNA DPLVARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASAAAAA NGNAGGIGME SSTQHTINGS
201: WAHNSQGQKM PCYTSAYGNH EFRFIEDHDD RDSDNAISFW PFLASQHC
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.