Factsheet for Solyc02g062760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062760.2.1	nucleus, nucleus
Solyc02g085190.1.1	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	Solyc02g062760.2.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g062760.2.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT3G50870.1	23335616
AT3G50870.1	Solyc02g062760.2.1	AT4G36620.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT4G36620.1	23335616
AT3G50870.1	Solyc02g062760.2.1	AT4G36620.1	23335616
AT3G50870.1	Solyc02g085190.1.1	AT4G36620.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040074	Potato	nucleus	88.58	90.73
Solyc02g085190.1.1	Tomato	plastid	53.94	54.37
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	50.79	53.75
CDY13040	Canola	cytosol	33.46	42.71
CDY72649	Canola	nucleus	33.46	42.5
CDY60289	Canola	nucleus	33.07	41.58
Bra017766.1-P	Field mustard	nucleus	30.71	41.27
CDY51221	Canola	nucleus	32.28	40.8
CDY69687	Canola	nucleus	30.32	40.74
CDY53079	Canola	cytosol	32.28	39.61
AT2G18380.1	Thale cress	cytosol	31.89	38.94
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.87	38.69
CDX73777	Canola	nucleus	42.91	37.59
CDY24779	Canola	nucleus	31.5	37.56
AT4G36620.1	Thale cress	cytosol	31.1	37.44
Bra036854.1-P	Field mustard	nucleus	42.52	37.37
CDX77958	Canola	nucleus	38.98	37.22
Bra010563.1-P	Field mustard	cytosol	31.1	37.09
CDY68627	Canola	nucleus	31.5	36.04
Bra011695.1-P	Field mustard	nucleus	31.5	35.87
CDY70754	Canola	nucleus	31.5	35.87
CDX72587	Canola	cytosol	31.89	35.68
CDX69237	Canola	nucleus	31.1	35.43
CDY28986	Canola	cytosol	37.8	35.04
CDX90680	Canola	nucleus	37.4	34.17
Bra012883.1-P	Field mustard	nucleus	37.4	34.17
AT3G50870.1	Thale cress	cytosol	39.37	33.9
CDY30768	Canola	nucleus	30.32	33.77
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	27.56	33.18
CDY45238	Canola	nucleus	30.71	33.05
Bra012080.1-P	Field mustard	nucleus	30.71	33.05
GSMUA_Achr7P25620_001	Banana	nucleus	29.92	32.62
Bra037221.1-P	Field mustard	nucleus	30.32	32.49
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	28.35	32.14
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	28.74	31.74
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	28.74	31.47
Zm00001d043969_P001	Maize	endoplasmic reticulum	28.74	31.33
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	28.74	31.2
KXG33047	Sorghum	extracellular	29.92	31.15
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	28.35	31.03
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	24.8	31.03
Solyc09g075610.2.1	Tomato	plastid	10.63	30.34
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	28.74	30.17
Os05t0567900-00	Rice	cytosol, extracellular, plastid	27.17	27.6
EES19963	Sorghum	mitochondrion, nucleus, vacuole	24.8	27.51
Solyc01g060490.2.1	Tomato	nucleus	15.35	22.81
Solyc12g099370.1.1	Tomato	nucleus	12.99	19.64
Solyc01g100220.2.1	Tomato	nucleus	10.63	18.12
Solyc05g054400.2.1	Tomato	nucleus	13.39	17.26
Solyc07g038160.2.1	Tomato	nucleus	17.32	16.54
Solyc12g008830.1.1	Tomato	nucleus	17.32	15.02

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:K4B6G4	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc02g062760.2	EnsemblPlants:Solyc02g062760.2.1	UniParc:UPI000276828F
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:34539201..34540196

Molecular Weight (calculated)

28162.8 Da

IEP (calculated)

7.737

GRAVY (calculated)

-0.986

Length

254 amino acids

Sequence
(BLAST)

001: MNSCGNAYCH GGPCTCNLYY NHENNNASSA YSMLYHEYHQ KDENHSENMY SFASSPSSSS SSVDCTLSLG TPSTRLSNDE RRLHDSSHEP QRRSSSYMSK
101: CWNLLQNKNN HTSSTHHHKS GRGSSNNNVN SSSSNNIADP LVARRCANCD TTSTPLWRNG PRGPKSLCNA CGIRFKKEER RASAAAAANG IGIGSESSTQ
201: HTINGSWVHH SQGQKMPCYT SAYGNHEFRF IEDHDDRDSD NAISFWPFLA SQHC

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.